Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01478 ATGTCTTCTCGGAGCTTTTTAATTGCGATTAGTGTTCTTGCGGCGGTATTCGTGGCGGAGGCGGGAACGACGGCGATTTTGATAACTGTGGATCAATCCGGGAAGGGGAATTTTACGAAGATTCAAGAGGCGATTGATGCAGTGCCGGAAAATAACACGGAGGAGGTGTTTATTGCGGTGAAGGCGGGGATTTACAGAGAGAAGGTGGTGGTTCCGGCAAATAAACCGTACATTACAATCAGTGGAAGAACAGCAGTGGATACGATCATCAGTTGGAATGATAGCAGAATTACTTATGATTCAGCAACTCTTGCAGTTTTGGCCTCTGATTTCGTGGGACGATACCTCACAATTCAGAATGATTTTGGACGGGGTGCGCAAGCAGTGGCATTACGGGTATCTGGAGATAGAGTATCATTTACCGCTTGTAGATTTTTGGGCCATCAAGATACTCTTCTAGACGACATCGGTCGCCATTACTACAAAAGTTGTTACATTCAAGGAGCCACCGATTTCATTTGCGGAAATGCAGCTTCACTTTTTGAGAATTGCCATCTACGGTCAGTTTCGGACTCCGTCGGGACCATCACGGCGCAACGGAGAGAATCGCCGTCGGAGAATACGGGATTCGTATTCATGGGATGTAAAATCACGGGGATCAACTCGGCGGTTTTAGGAAGGCCATGGGGAGCATTTTCTAGGGTCGTCTTTGGCTTCACTTACATGTCTGACCTTATTCTCCCTCAGGGTTGGGATGACTGGCATGACCCTTCCAAACAAAGCACTGTGTACTATGGGCAATACAAATGTTATGGACAAGGAGCCAATCCTTCAAGAAGGGTACCATGGTCATTTACTAACATGACTACCGAAGAAGCTGCACCATTTTTCACTAAATCCTTTATTGGCGCTGCTGATTGGCTCAGGCCATTGCCAACACATTTCAAGAGAGCCTTCTCTTCCAAACCCTAA 972 46.71 MSSRSFLIAISVLAAVFVAEAGTTAILITVDQSGKGNFTKIQEAIDAVPENNTEEVFIAVKAGIYREKVVVPANKPYITISGRTAVDTIISWNDSRITYDSATLAVLASDFVGRYLTIQNDFGRGAQAVALRVSGDRVSFTACRFLGHQDTLLDDIGRHYYKSCYIQGATDFICGNAASLFENCHLRSVSDSVGTITAQRRESPSENTGFVFMGCKITGINSAVLGRPWGAFSRVVFGFTYMSDLILPQGWDDWHDPSKQSTVYYGQYKCYGQGANPSRRVPWSFTNMTTEEAAPFFTKSFIGAADWLRPLPTHFKRAFSSKP 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27653586 27656217 + ClCG08G014940.1 Cla08g01478 279133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01478 323 Pfam Pectinesterase 28 303 IPR000070 GO:0030599|GO:0042545
Cla08g01478 323 Gene3D - 23 318 IPR012334 -
Cla08g01478 323 PANTHER PECTINESTERASE 11-RELATED 8 309 - -
Cla08g01478 323 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 8 309 - -
Cla08g01478 323 SUPERFAMILY Pectin lyase-like 24 315 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01478 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215800 582.408
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g01478 Cla11g00409 CCT
Cla08g01478 Cla11g00409 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00750 Cla-Chr6:9993867 Cla08g01478 Cla-Chr8:27653586 2.89E-70 dispersed
Cla08g01478 Cla-Chr8:27653586 Cla09g01759 Cla-Chr9:34955136 7.55E-72 dispersed
Cla01g00398 Cla-Chr1:4379654 Cla08g01478 Cla-Chr8:27653586 1.11E-84 transposed
Cla03g01420 Cla-Chr3:29747240 Cla08g01478 Cla-Chr8:27653586 2.92E-80 transposed
Cla07g00840 Cla-Chr7:23283064 Cla08g01478 Cla-Chr8:27653586 6.64E-87 transposed
Cla07g01044 Cla-Chr7:26925844 Cla08g01478 Cla-Chr8:27653586 4.32E-82 transposed
Cla09g00449 Cla-Chr9:4265709 Cla08g01478 Cla-Chr8:27653586 1.18E-06 transposed
Cla09g02059 Cla-Chr9:38176455 Cla08g01478 Cla-Chr8:27653586 2.06E-70 transposed
Cla11g01109 Cla-Chr11:22535585 Cla08g01478 Cla-Chr8:27653586 1.63E-49 transposed
Cla11g00409 Cla-Chr11:4607590 Cla08g01478 Cla-Chr8:27653586 2.62E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51