Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01497 ATGGAGCTTTTCTCTCCGGTCTTCCTCTATTTAAACCCAATTCAACCTTCTTCTAACTCTACACCGAACTATATCAATTTCAGTTTTCATTCTCATTTCTCTCGAGCCCTAGCAATGGCGCAGAATGGCACCTCAGATGTTAATGAGCCACAACGATCGCCCAAGGTACAGAAGCTTGCTCACGAGAACGGTGAATCTGAAAATGTCAGCCATTCATCAACGCTTCTCAGAGTAAAGAAGCTGTCAGAGAAAGCCGTCTTGCCAACGCGAGCCTCCGTTCTCTCCGCTGGTTACGATCTTTCCAGCGCAATAGAGACGAAGATCCCTGCACGAGGAAGAGTTTTAGTTCCGACTGATTTGAGCATCGCGATTCCAGAAGGAACTTACGCTCGGATTGCGCCGCGATCGGGCTTGGCTTTGAAGCATGCGATCGATGTTGGTGCGGGTGTGATTGATGCTGATTACAGGGGCCCTGTGGGAGTGATATTATTCAATCACTCTGACGTGGACTTTGAGGTGAAAGCCGGCGACCGGATCGCACAGATGATTCTTGAGAAAATTATTACGCCGGAAGTGATGGAGGTCGAGGATTTGGATTCCACTCTCAGAGGCGAAGCTGGCTTCGGCTCTACAGGTGTTTGA 642 49.07 MELFSPVFLYLNPIQPSSNSTPNYINFSFHSHFSRALAMAQNGTSDVNEPQRSPKVQKLAHENGESENVSHSSTLLRVKKLSEKAVLPTRASVLSAGYDLSSAIETKIPARGRVLVPTDLSIAIPEGTYARIAPRSGLALKHAIDVGAGVIDADYRGPVGVILFNHSDVDFEVKAGDRIAQMILEKIITPEVMEVEDLDSTLRGEAGFGSTGV 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27816731 27817538 - ClCG08G015180.2 Cla08g01497 279152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01497 213 PANTHER DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE 47 213 - -
Cla08g01497 213 CDD trimeric_dUTPase 96 184 IPR033704 -
Cla08g01497 213 SUPERFAMILY dUTPase-like 72 213 IPR036157 -
Cla08g01497 213 PANTHER DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE 47 213 IPR008181 GO:0000287|GO:0004170|GO:0006226|GO:0046081
Cla08g01497 213 TIGRFAM dut: dUTP diphosphatase 77 212 IPR008181 GO:0000287|GO:0004170|GO:0006226|GO:0046081
Cla08g01497 213 Pfam dUTPase 84 212 IPR029054 -
Cla08g01497 213 Gene3D - 63 213 IPR036157 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01497 K01520 dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23] - csv:101218654 331.643
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g931 . . . . . . . . Cmo05g00242 . . . . . . . . Bhi04g00255 . . . Hepe10g0651 . . Cla08g01497 Cam08g1987 Cec08g1562 Cco08g1699 Clacu08g1677 . Cre08g1460 . Cone7ag1819 . . . . . Cme03g01965 . . . . . . . . . . . . Cma05g00234 . . . . . . . . . . . . . . . . . . . Csa02g02044 Chy03g01469 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006777 1 1 3 3 1 1 0 1 1 1 1 1 1 1 0 1 1 1 0 1 1 2 1 1 0 1 1 1 0 2 31