Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01505 ATGGTATCAGCAGAGAATAATTCTCAATCGGCGAAGGTTGTAGCATCTTCCTCGCCGGGAGGTGAAATCGAGATCATCGACTCCGTGACTCCGGCGAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTTATAGCTCTGTCGCCAAAATCACTTCTAGCAACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGCCACAACTTACCTTGGAAGCTCCGGCAACGGACGAGCAATGAGATTCGAAAACGAGTTTACGTCTGTCCGGAGCCTTCTTGCGTTCATCATAATCCGGCTAGGGCACTAGGCGATCTAACTGGCATTAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAACGGTGCTCGAAGAAATACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGTGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACCCATCGGGCTTTTTGTGATGCTTTGGCGTTTGCAAGCTCGGATTCCAATGTGATGGCTACCGCTGCTGCCGCCGGCGTGGCGGTTACTTCTTCGGCATTGGCCACCGTGCCGCTATCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGACCTCCGCCATTAACACCGGCAGCGACAAGCTTAACCTCGGCCGTGGCCTGCAACGTCAACAAAACCAGCCCAACTAACGGCGGTGGTACAAGCGTTTTCGCGGGTGTATTTGCTTCTTCTCCTCCCATTGTTACCAGTGCTGCTGCCCCAAATCCGCCCCATCCACTCACCACCGCCGTCAGCCGATCAGAAGGCGGCAATGAACCCCTAACCACCGTCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTTCAAAACCATCCTCCACATTACTCACCGTCGCTCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGCTGTCACTGTCACCGTCTCCCGGCCCCACCATCTCCATGACGGCTGGGCTCGGACTTGGATTTGGGAGCGAGCCCACCACGCGGGACCTCCTAGGACTGGGCATGGGCGGCGGCGGAGGAGGAGGAGGTGGGGTTTCCGGCGGCGGTCTTTCTGCTCTTTTCACGTCCTTTGATGGATGTGACGTTGAAGCTGCTTCGCCTTACGGAGGCGGGGGGAATAATGGGCTATGA 1380 55.51 MVSAENNSQSAKVVASSSPGGEIEIIDSVTPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVMATAAAAGVAVTSSALATVPLSPALSIQSSEAPDIPMGPPPLTPAATSLTSAVACNVNKTSPTNGGGTSVFAGVFASSPPIVTSAAAPNPPHPLTTAVSRSEGGNEPLTTVIEPTSLSLSTSLFLSCRASASSGSTSASSIFQNHPPHYSPSLQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPTISMTAGLGLGFGSEPTTRDLLGLGMGGGGGGGGGVSGGGLSALFTSFDGCDVEAASPYGGGGNNGL 459
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 27861370 27864221 + ClCG08G015260.2 Cla08g01505 279160
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01505 459 MobiDBLite consensus disorder prediction 281 308 - -
Cla08g01505 459 SMART c2h2final6 138 158 IPR013087 -
Cla08g01505 459 SMART c2h2final6 103 133 IPR013087 -
Cla08g01505 459 SMART c2h2final6 62 84 IPR013087 -
Cla08g01505 459 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cla08g01505 459 Gene3D Classic Zinc Finger 117 193 - -
Cla08g01505 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cla08g01505 459 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cla08g01505 459 Pfam Zinc-finger of C2H2 type 62 84 - -
Cla08g01505 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 456 - -
Cla08g01505 459 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 4 456 - -
Cla08g01505 459 Gene3D Classic Zinc Finger 62 105 - -
Cla08g01505 459 MobiDBLite consensus disorder prediction 292 308 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00857 Cla-Chr7:23916596 Cla08g01505 Cla-Chr8:27861370 3.39E-117 dispersed
Cla08g01505 Cla-Chr8:27861370 Cla10g01937 Cla-Chr10:35207330 2.31E-107 dispersed
Cla01g01365 Cla-Chr1:27649044 Cla08g01505 Cla-Chr8:27861370 1.17E-24 transposed
Cla01g01830 Cla-Chr1:33196601 Cla08g01505 Cla-Chr8:27861370 2.01E-29 transposed
Cla04g01024 Cla-Chr4:25367873 Cla08g01505 Cla-Chr8:27861370 6.38E-74 transposed
Cla04g01243 Cla-Chr4:27554467 Cla08g01505 Cla-Chr8:27861370 1.31E-75 transposed
Cla09g00973 Cla-Chr9:10230265 Cla08g01505 Cla-Chr8:27861370 1.51E-25 transposed
Cla01g01891 Cla-Chr1:33706688 Cla08g01505 Cla-Chr8:27861370 1.92E-110 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61607 PF12874 zf-met 0.0032 CL0361 Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01505 K25869 - csv:101217471 728.398