Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g01505 | ATGGTATCAGCAGAGAATAATTCTCAATCGGCGAAGGTTGTAGCATCTTCCTCGCCGGGAGGTGAAATCGAGATCATCGACTCCGTGACTCCGGCGAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTTATAGCTCTGTCGCCAAAATCACTTCTAGCAACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGCCACAACTTACCTTGGAAGCTCCGGCAACGGACGAGCAATGAGATTCGAAAACGAGTTTACGTCTGTCCGGAGCCTTCTTGCGTTCATCATAATCCGGCTAGGGCACTAGGCGATCTAACTGGCATTAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAACGGTGCTCGAAGAAATACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGTGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACCCATCGGGCTTTTTGTGATGCTTTGGCGTTTGCAAGCTCGGATTCCAATGTGATGGCTACCGCTGCTGCCGCCGGCGTGGCGGTTACTTCTTCGGCATTGGCCACCGTGCCGCTATCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGACCTCCGCCATTAACACCGGCAGCGACAAGCTTAACCTCGGCCGTGGCCTGCAACGTCAACAAAACCAGCCCAACTAACGGCGGTGGTACAAGCGTTTTCGCGGGTGTATTTGCTTCTTCTCCTCCCATTGTTACCAGTGCTGCTGCCCCAAATCCGCCCCATCCACTCACCACCGCCGTCAGCCGATCAGAAGGCGGCAATGAACCCCTAACCACCGTCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTTCAAAACCATCCTCCACATTACTCACCGTCGCTCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGCTGTCACTGTCACCGTCTCCCGGCCCCACCATCTCCATGACGGCTGGGCTCGGACTTGGATTTGGGAGCGAGCCCACCACGCGGGACCTCCTAGGACTGGGCATGGGCGGCGGCGGAGGAGGAGGAGGTGGGGTTTCCGGCGGCGGTCTTTCTGCTCTTTTCACGTCCTTTGATGGATGTGACGTTGAAGCTGCTTCGCCTTACGGAGGCGGGGGGAATAATGGGCTATGA | 1380 | 55.51 | MVSAENNSQSAKVVASSSPGGEIEIIDSVTPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVMATAAAAGVAVTSSALATVPLSPALSIQSSEAPDIPMGPPPLTPAATSLTSAVACNVNKTSPTNGGGTSVFAGVFASSPPIVTSAAAPNPPHPLTTAVSRSEGGNEPLTTVIEPTSLSLSTSLFLSCRASASSGSTSASSIFQNHPPHYSPSLQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPTISMTAGLGLGFGSEPTTRDLLGLGMGGGGGGGGGVSGGGLSALFTSFDGCDVEAASPYGGGGNNGL | 459 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 27861370 | 27864221 | + | ClCG08G015260.2 | Cla08g01505 | 279160 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g01505 | 459 | MobiDBLite | consensus disorder prediction | 281 | 308 | - | - | |
| Cla08g01505 | 459 | SMART | c2h2final6 | 138 | 158 | IPR013087 | - | |
| Cla08g01505 | 459 | SMART | c2h2final6 | 103 | 133 | IPR013087 | - | |
| Cla08g01505 | 459 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - | |
| Cla08g01505 | 459 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
| Cla08g01505 | 459 | Gene3D | Classic Zinc Finger | 117 | 193 | - | - | |
| Cla08g01505 | 459 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 84 | IPR013087 | - | |
| Cla08g01505 | 459 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 159 | IPR036236 | - | |
| Cla08g01505 | 459 | Pfam | Zinc-finger of C2H2 type | 62 | 84 | - | - | |
| Cla08g01505 | 459 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 4 | 456 | - | - | |
| Cla08g01505 | 459 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 4 | 456 | - | - | |
| Cla08g01505 | 459 | Gene3D | Classic Zinc Finger | 62 | 105 | - | - | |
| Cla08g01505 | 459 | MobiDBLite | consensus disorder prediction | 292 | 308 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g00857 | Cla-Chr7:23916596 | Cla08g01505 | Cla-Chr8:27861370 | 3.39E-117 | dispersed | |
| Cla08g01505 | Cla-Chr8:27861370 | Cla10g01937 | Cla-Chr10:35207330 | 2.31E-107 | dispersed | |
| Cla01g01365 | Cla-Chr1:27649044 | Cla08g01505 | Cla-Chr8:27861370 | 1.17E-24 | transposed | |
| Cla01g01830 | Cla-Chr1:33196601 | Cla08g01505 | Cla-Chr8:27861370 | 2.01E-29 | transposed | |
| Cla04g01024 | Cla-Chr4:25367873 | Cla08g01505 | Cla-Chr8:27861370 | 6.38E-74 | transposed | |
| Cla04g01243 | Cla-Chr4:27554467 | Cla08g01505 | Cla-Chr8:27861370 | 1.31E-75 | transposed | |
| Cla09g00973 | Cla-Chr9:10230265 | Cla08g01505 | Cla-Chr8:27861370 | 1.51E-25 | transposed | |
| Cla01g01891 | Cla-Chr1:33706688 | Cla08g01505 | Cla-Chr8:27861370 | 1.92E-110 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61607 | PF12874 | zf-met | 0.0032 | CL0361 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g01505 | K25869 | - | csv:101217471 | 728.398 |