Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01518 ATGATGGTGGGGTGTGTAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCCAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG 714 45.24 MMVGCVDMASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27962138 27963255 + ClCG08G015390.1 Cla08g01518 279173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01518 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 103 IPR013083 -
Cla08g01518 237 PANTHER OS12G0636000 PROTEIN 9 237 - -
Cla08g01518 237 Pfam Zinc finger, C3HC4 type (RING finger) 36 77 - -
Cla08g01518 237 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Cla08g01518 237 MobiDBLite consensus disorder prediction 91 129 - -
Cla08g01518 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cla08g01518 237 SUPERFAMILY RING/U-box 33 90 - -
Cla08g01518 237 ProSiteProfiles Zinc finger RING-type profile. 37 78 IPR001841 -
Cla08g01518 237 CDD RING-HC_AtRMA_like 35 79 - -
Cla08g01518 237 SMART ring_2 37 77 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01518 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - csv:101221027 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01518 Cla-Chr8:27962138 Cla11g01769 Cla-Chr11:31299272 7.44E-30 dispersed
Cla10g01207 Cla-Chr10:26714713 Cla08g01518 Cla-Chr8:27962138 2.65E-23 transposed
Cla10g01676 Cla-Chr10:32483683 Cla08g01518 Cla-Chr8:27962138 6.49E-30 transposed
Cla01g01589 Cla-Chr1:30580109 Cla08g01518 Cla-Chr8:27962138 2.13E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g886 . . Bda01g00547 . Bpe02g00406 . Bma04g00198 Bma01g02302 Cmo05g00227 . . . . . Sed11g1002 . . Bhi04g00282 Tan02g1923 Cmetu03g0100 . Hepe10g0677 . Lcy13g2012 Cla08g01518 Cam08g2009 Cec08g1585 Cco08g1720 Clacu08g1698 . Cre08g1481 Cone4ag1888 Cone7ag1799 Cone17ag1319 Cone20ag0156 . . . Cme03g01984 . . . . . . . . . . . . Cma05g00220 Car05g00180 . Cpe11g00182 . . . . . . . . . . . . . . . Lsi08g01421 Csa02g02021 Chy03g01490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00460 . 77 596 C3H Transcription Factor Family AT2G31510 70.8 2.8e-220 761.5
Cla11g00869 . 82 541 C3H Transcription Factor Family AT2G31510 73.3 4.2e-208 721.1
Cla08g00460 . 60 552 C3H Transcription Factor Family AT2G31770 56.2 1.4e-164 576.6
Cla11g00869 . 51 515 C3H Transcription Factor Family AT2G31770 52.4 1.0e-146 517.3
Cla08g00460 . 60 559 C3H Transcription Factor Family AT2G31760 54.8 2.1e-162 569.3
Cla11g00869 . 65 500 C3H Transcription Factor Family AT2G31760 54.3 2.7e-149 525.8
Cla01g01481 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.5e-47 186.4
Cla01g01481 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.5e-47 186.4
Cla11g00466 . 333 551 C3H Transcription Factor Family AT3G02290 62.6 5.4e-73 271.2
Cla06g01069 . 34 338 C3H Transcription Factor Family AT1G11020 75.3 5.3e-135 477.6
Cla07g01390 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 4.1e-68 255.0
Cla04g00220 . 93 453 C3H Transcription Factor Family AT5G08750 61.0 6.4e-121 431.0
Cla10g00873 . 77 501 C3H Transcription Factor Family AT3G16090 71.8 6.8e-166 580.9
Cla11g00466 . 329 551 C3H Transcription Factor Family AT5G38895 56.3 3.7e-70 262.3
Cla08g01518 . 23 234 C3H Transcription Factor Family AT1G19310 66.8 1.3e-79 293.1
Cla01g01589 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 2.1e-69 259.2
Cla01g01866 . 100 387 C3H Transcription Factor Family AT2G22120 70.7 3.2e-128 455.3
Cla08g01070 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.2e-40 161.8
Cla06g01484 . 30 426 C3H Transcription Factor Family AT1G18470 68.0 2.6e-158 555.4
Cla01g00581 . 81 312 C3H Transcription Factor Family AT1G68200 50.2 5.0e-50 195.3
Cla08g00460 . 60 552 C3H Transcription Factor Family AT2G31770 56.2 1.4e-164 576.6
Cla11g00869 . 51 515 C3H Transcription Factor Family AT2G31770 52.4 1.0e-146 517.3
Cla08g00460 . 60 559 C3H Transcription Factor Family AT2G31760 54.8 2.1e-162 569.3
Cla11g00869 . 65 500 C3H Transcription Factor Family AT2G31760 54.3 2.7e-149 525.8
Cla09g02094 . 114 346 C3H Transcription Factor Family AT5G55970 67.8 5.0e-93 338.2
Cla04g00220 . 93 453 C3H Transcription Factor Family AT5G63780 57.2 8.2e-116 414.1
Cla10g01676 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 1.0e-104 377.5
Cla09g02094 . 116 415 C3H Transcription Factor Family AT4G26580 62.3 5.2e-109 391.3
Cla07g00504 . 1 503 C3H Transcription Factor Family AT5G01960 53.0 3.5e-134 475.3
Cla02g01065 . 51 205 C3H Transcription Factor Family AT2G04240 59.3 8.3e-44 173.7
Cla02g02217 . 71 315 C3H Transcription Factor Family AT5G19430 53.3 3.0e-64 242.3
Cla07g01061 . 188 606 C3H Transcription Factor Family AT5G45290 55.4 2.6e-105 379.8
Cla02g02217 . 110 315 C3H Transcription Factor Family AT5G12310 56.4 2.9e-59 225.7
Cla06g01384 . 413 705 C3H Transcription Factor Family AT5G05810 52.8 3.9e-74 275.8
Cla11g00617 . 53 219 C3H Transcription Factor Family AT5G05830 65.3 2.0e-58 222.6
Cla10g02055 CCT,ECH 70 215 C3H Transcription Factor Family AT5G05830 58.2 3.2e-45 178.7
Cla04g00736 CCT,ECH 38 168 C3H Transcription Factor Family AT5G05830 61.8 3.1e-40 162.2
Cla11g00466 . 333 551 C3H Transcription Factor Family AT5G15790 59.6 3.0e-71 265.4
Cla11g00648 CCT,ECH 493 764 C3H Transcription Factor Family AT3G55530 80.2 5.2e-115 411.0
Cla09g00626 . 85 357 C3H Transcription Factor Family AT1G63900 75.5 9.6e-117 416.8
Cla05g00288 . 61 443 C3H Transcription Factor Family AT2G44580 53.7 3.4e-120 428.7
Cla08g01518 . 32 157 C3H Transcription Factor Family AT1G74990 59.8 9.5e-41 163.3
Cla05g01648 . 142 422 C3H Transcription Factor Family AT5G20910 61.8 3.0e-95 345.5
Cla10g00873 . 195 487 C3H Transcription Factor Family AT1G65040 68.8 2.0e-105 379.4
Cla01g01589 . 17 227 C3H Transcription Factor Family AT2G23780 62.1 1.1e-73 273.5
Cla08g01518 . 13 236 C3H Transcription Factor Family AT2G23780 57.0 7.2e-70 260.8
Cla10g01555 CCT 1 317 C3H Transcription Factor Family AT3G10810 53.6 2.3e-81 300.1
Cla01g00245 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.0e-45 179.1
Cla05g00192 . 49 376 C3H Transcription Factor Family AT1G68070 50.2 1.0e-88 323.9
Cla01g00642 CCT 18 307 C3H Transcription Factor Family AT1G68070 60.2 3.4e-87 318.9
Cla11g01841 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.7e-51 198.7
Cla10g00012 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 5.0e-45 177.9
Cla08g01288 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 1.0e-111 400.6
Cla10g00012 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.4e-39 157.9
Cla08g00460 . 77 596 C3H Transcription Factor Family AT2G31510 70.8 2.8e-220 761.5
Cla11g00869 . 82 541 C3H Transcription Factor Family AT2G31510 73.3 4.2e-208 721.1
Cla01g01481 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.1e-54 210.3
Cla10g01731 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.2e-41 164.9
Cla04g00105 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 5.0e-151 530.8
Cla05g00970 . 666 923 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.1
Cla05g00969 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 1.0e-127 453.4
Cla02g02306 . 174 470 C3H Transcription Factor Family AT2G41980 71.8 3.9e-127 451.4
Cla01g00756 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 4.7e-125 444.5
Cla06g00118 . 43 301 C3H Transcription Factor Family AT2G41980 74.9 9.9e-123 436.8
Cla05g02675 . 48 259 C3H Transcription Factor Family AT2G41980 68.5 3.5e-96 348.6
Cla05g00579 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.7e-95 345.9
Cla06g01657 CCT 43 333 C3H Transcription Factor Family AT3G47990 63.9 2.9e-111 398.7
Cla01g01293 CCT 348 613 C3H Transcription Factor Family AT3G47990 57.7 1.0e-87 320.5
Cla11g01841 . 4 185 C3H Transcription Factor Family AT1G20823 56.0 4.5e-52 201.4
Cla10g00012 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.3e-46 183.3
Cla09g01740 . 37 405 C3H Transcription Factor Family AT3G18930 54.4 3.2e-84 309.3
Cla10g00050 . 20 235 C3H Transcription Factor Family AT5G66070 75.0 3.3e-75 278.5
Cla10g01969 . 680 950 C3H Transcription Factor Family AT5G02750 53.4 6.4e-68 254.6
Cla06g01484 . 34 504 C3H Transcription Factor Family AT1G73950 66.2 2.4e-178 622.1
Cla08g00174 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.6e-39 157.9
Cla01g00642 CCT 15 256 C3H Transcription Factor Family AT2G01735 59.6 3.9e-72 268.5
Cla10g00333 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.4e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001146 5 2 2 4 3 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 2 2 79