Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01518 ATGATGGTGGGGTGTGTAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCCAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG 714 45.24 MMVGCVDMASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27962138 27963255 + ClCG08G015390.1 Cla08g01518 279173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01518 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 103 IPR013083 -
Cla08g01518 237 PANTHER OS12G0636000 PROTEIN 9 237 - -
Cla08g01518 237 Pfam Zinc finger, C3HC4 type (RING finger) 36 77 - -
Cla08g01518 237 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Cla08g01518 237 MobiDBLite consensus disorder prediction 91 129 - -
Cla08g01518 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cla08g01518 237 SUPERFAMILY RING/U-box 33 90 - -
Cla08g01518 237 ProSiteProfiles Zinc finger RING-type profile. 37 78 IPR001841 -
Cla08g01518 237 CDD RING-HC_AtRMA_like 35 79 - -
Cla08g01518 237 SMART ring_2 37 77 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01518 Cla-Chr8:27962138 Cla11g01769 Cla-Chr11:31299272 7.44E-30 dispersed
Cla10g01207 Cla-Chr10:26714713 Cla08g01518 Cla-Chr8:27962138 2.65E-23 transposed
Cla10g01676 Cla-Chr10:32483683 Cla08g01518 Cla-Chr8:27962138 6.49E-30 transposed
Cla01g01589 Cla-Chr1:30580109 Cla08g01518 Cla-Chr8:27962138 2.13E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01518 K10666 - csv:101221027 412.535