Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01518 | ATGATGGTGGGGTGTGTAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCCAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG | 714 | 45.24 | MMVGCVDMASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27962138 | 27963255 | + | ClCG08G015390.1 | Cla08g01518 | 279173 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01518 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 103 | IPR013083 | - | |
Cla08g01518 | 237 | PANTHER | OS12G0636000 PROTEIN | 9 | 237 | - | - | |
Cla08g01518 | 237 | Pfam | Zinc finger, C3HC4 type (RING finger) | 36 | 77 | - | - | |
Cla08g01518 | 237 | ProSitePatterns | Zinc finger RING-type signature. | 52 | 61 | IPR017907 | - | |
Cla08g01518 | 237 | MobiDBLite | consensus disorder prediction | 91 | 129 | - | - | |
Cla08g01518 | 237 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 9 | 237 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Cla08g01518 | 237 | SUPERFAMILY | RING/U-box | 33 | 90 | - | - | |
Cla08g01518 | 237 | ProSiteProfiles | Zinc finger RING-type profile. | 37 | 78 | IPR001841 | - | |
Cla08g01518 | 237 | CDD | RING-HC_AtRMA_like | 35 | 79 | - | - | |
Cla08g01518 | 237 | SMART | ring_2 | 37 | 77 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g01518 | Cla-Chr8:27962138 | Cla11g01769 | Cla-Chr11:31299272 | 7.44E-30 | dispersed | |
Cla10g01207 | Cla-Chr10:26714713 | Cla08g01518 | Cla-Chr8:27962138 | 2.65E-23 | transposed | |
Cla10g01676 | Cla-Chr10:32483683 | Cla08g01518 | Cla-Chr8:27962138 | 6.49E-30 | transposed | |
Cla01g01589 | Cla-Chr1:30580109 | Cla08g01518 | Cla-Chr8:27962138 | 2.13E-76 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01518 | K10666 | - | csv:101221027 | 412.535 |