Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01528 ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCGAATTGTGAGAATTCTAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGGAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATAGTAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA 798 41.48 MFSSTTHHSHWNNFIMDYTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQEQEKDRHNGNANMKISSGVKKQNNNNNNSNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28030490 28034051 - ClCG08G015490.2 Cla08g01528 279183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01528 265 Gene3D - 74 131 - -
Cla08g01528 265 SUPERFAMILY Homeodomain-like 72 129 IPR009057 -
Cla08g01528 265 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 75 128 IPR006447 GO:0003677
Cla08g01528 265 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 50 249 - -
Cla08g01528 265 Pfam Myb-like DNA-binding domain 76 127 IPR001005 -
Cla08g01528 265 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 50 249 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cla08g01528 265 MobiDBLite consensus disorder prediction 146 166 - -
Cla08g01528 265 MobiDBLite consensus disorder prediction 199 233 - -
Cla08g01528 265 MobiDBLite consensus disorder prediction 213 233 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01991 Cla08g01528 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01528 Cla-Chr8:28030490 Cla09g01095 Cla-Chr9:11716157 4.23E-39 dispersed
Cla11g01614 Cla-Chr11:29816543 Cla08g01528 Cla-Chr8:28030490 2.13E-19 dispersed
Cla01g02323 Cla-Chr1:37024547 Cla08g01528 Cla-Chr8:28030490 6.81E-22 transposed
Cla02g01749 Cla-Chr2:32423108 Cla08g01528 Cla-Chr8:28030490 8.90E-20 transposed
Cla05g01991 Cla-Chr5:31705358 Cla08g01528 Cla-Chr8:28030490 1.05E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61610 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01528 - - csv:101219131 405.216