Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01528 | ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCGAATTGTGAGAATTCTAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGCAGGAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATAGTAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA | 798 | 41.48 | MFSSTTHHSHWNNFIMDYTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQQEQEKDRHNGNANMKISSGVKKQNNNNNNSNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28030490 | 28034051 | - | ClCG08G015490.2 | Cla08g01528 | 279183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01528 | 265 | Gene3D | - | 74 | 131 | - | - | |
Cla08g01528 | 265 | SUPERFAMILY | Homeodomain-like | 72 | 129 | IPR009057 | - | |
Cla08g01528 | 265 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 75 | 128 | IPR006447 | GO:0003677 | |
Cla08g01528 | 265 | PANTHER | TRANSCRIPTION FACTOR KAN4-RELATED | 50 | 249 | - | - | |
Cla08g01528 | 265 | Pfam | Myb-like DNA-binding domain | 76 | 127 | IPR001005 | - | |
Cla08g01528 | 265 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 50 | 249 | IPR044847 | GO:0000976|GO:0006355|GO:0010158 | |
Cla08g01528 | 265 | MobiDBLite | consensus disorder prediction | 146 | 166 | - | - | |
Cla08g01528 | 265 | MobiDBLite | consensus disorder prediction | 199 | 233 | - | - | |
Cla08g01528 | 265 | MobiDBLite | consensus disorder prediction | 213 | 233 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g01991 | Cla08g01528 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g01528 | Cla-Chr8:28030490 | Cla09g01095 | Cla-Chr9:11716157 | 4.23E-39 | dispersed | |
Cla11g01614 | Cla-Chr11:29816543 | Cla08g01528 | Cla-Chr8:28030490 | 2.13E-19 | dispersed | |
Cla01g02323 | Cla-Chr1:37024547 | Cla08g01528 | Cla-Chr8:28030490 | 6.81E-22 | transposed | |
Cla02g01749 | Cla-Chr2:32423108 | Cla08g01528 | Cla-Chr8:28030490 | 8.90E-20 | transposed | |
Cla05g01991 | Cla-Chr5:31705358 | Cla08g01528 | Cla-Chr8:28030490 | 1.05E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61610 | PF00249 | Myb_DNA-binding | 1.00E-05 | CL0123 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01528 | - | - | csv:101219131 | 405.216 |