Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01531 ATGGCTATTCGTGTTACTCTCTCCTACTCTGGCTATGTCGCCCAAAACCTAGCCTCCTCCACCGGCCTTCGGGCCGGTAACTGCCGCGTCTTTCAGGAGTTTTGGGTCCGATCTTGTATTTTTGGATCGACCCATAATCCGGAGCTCAAATCTGCTGGAAGCGCGCGCAATTATCGGTCCGATAGCCGGCGGTTCAAGCCTGGTGACTCTGTCGAGAAGCCAACTTCTATGTACAGCACTCTCGCCGGAGAAAGGGTTGGGGAAAGCCCTAAGAATCCCATGGTTTTGGGTTTGATGTCGATGTTGAAATCGATGGCCGATTCTTCTGTGATCAGTACGGGGACTTTTGGGGTTTCTTCGTTTAAAGCCACTTCGATTATACCCTTTTTACAAGGATCGAAGTGGCTTCCGGGTTATGATATACGATCTCGTGTAAGCGACGATGTGGATAAAGGCGGAACAACGGTTTGTTATGATTATGATCTATGTGGGAGTAAACAGTTTTATGAGAATGATTTTGAGAAGAGCAGCTGGGTTTCGCGCTTGTTGAGTACTTATTCCGAGGACGCAAAGGCCCTCTTTACGGCTTTGACTGTTAGTGTGCTCTTTAAATCTTTCTTGGCGGAGCCGAAATCGATTCCTTCTTCTTCCATGTGTCCTACTCTGGAAGTAGGGGATCGTATTTTAGCAGAAAAGGTTTCGTACTTTTTCAGGAAACCTGAAGTTTCAGATATAGTGATCTTTAGGGCTCCTCAAATCTTGCAGGAATTTGGAGTTAGTTCAAATGAAGTGTTTATTAAGAGAGTTGTGGCTACATCTGGGGACGTGGTTGCAGTTCAAAAAGGGAAATTGGTGGTAAATGGTGTAGTTCAAGATGAGGACTTTGTCTTAGAGCCAATTGCTTATGAGATGGATCCATTGCTTGTGCCTGAAGGTTATGTGTATGTAATGGGGGACAACCGTAACAACAGTTGTGATTCTCATGACTGGGGTCCACTCCCAATAGAAAATATTGTAGGTAGATCATTATTCAAGTATTGGCCTCCCTCCAAGGGATCCGGGATGAAATTGCCCCTTTTCGGTACCAACCGCTGCAATATCTTTGCATATAAAACTTGGATTGGACTTCATGTCCGAATGGTGTGTATTAATGGAAGTAACTCCTGTACCTTGTGA 1176 45.24 MAIRVTLSYSGYVAQNLASSTGLRAGNCRVFQEFWVRSCIFGSTHNPELKSAGSARNYRSDSRRFKPGDSVEKPTSMYSTLAGERVGESPKNPMVLGLMSMLKSMADSSVISTGTFGVSSFKATSIIPFLQGSKWLPGYDIRSRVSDDVDKGGTTVCYDYDLCGSKQFYENDFEKSSWVSRLLSTYSEDAKALFTALTVSVLFKSFLAEPKSIPSSSMCPTLEVGDRILAEKVSYFFRKPEVSDIVIFRAPQILQEFGVSSNEVFIKRVVATSGDVVAVQKGKLVVNGVVQDEDFVLEPIAYEMDPLLVPEGYVYVMGDNRNNSCDSHDWGPLPIENIVGRSLFKYWPPSKGSGMKLPLFGTNRCNIFAYKTWIGLHVRMVCINGSNSCTL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28061442 28065353 + ClCG08G015520.2 Cla08g01531 279186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01531 391 CDD S26_SPase_I 209 341 IPR019533 GO:0004252|GO:0006465
Cla08g01531 391 MobiDBLite consensus disorder prediction 49 74 - -
Cla08g01531 391 Gene3D Umud Fragment, subunit A 203 358 - -
Cla08g01531 391 Pfam Signal peptidase, peptidase S26 190 347 IPR019533 GO:0004252|GO:0006465
Cla08g01531 391 SUPERFAMILY LexA/Signal peptidase 205 358 IPR036286 -
Cla08g01531 391 ProSitePatterns Signal peptidases I signature 3. 314 327 IPR019758 GO:0004252|GO:0016021
Cla08g01531 391 ProSitePatterns Signal peptidases I serine active site. 215 222 IPR019756 GO:0004252|GO:0016021
Cla08g01531 391 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 354 - -
Cla08g01531 391 TIGRFAM sigpep_I_bact: signal peptidase I 191 348 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla08g01531 391 PRINTS Bacterial leader peptidase 1 (S26A) family signature 265 277 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla08g01531 391 PRINTS Bacterial leader peptidase 1 (S26A) family signature 309 328 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla08g01531 391 PRINTS Bacterial leader peptidase 1 (S26A) family signature 206 222 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cla08g01531 391 PANTHER SIGNAL PEPTIDASE I 1 354 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01531 K03100 lepB; signal peptidase I [EC:3.4.21.89] - csv:101222362 647.891
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g01999 Cla08g01531 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01531 Cla-Chr8:28061442 Cla07g00987 Cla-Chr7:26083570 1.52E-06 dispersed
Cla01g02387 Cla-Chr1:37517715 Cla08g01531 Cla-Chr8:28061442 2.11E-13 transposed
Cla08g00618 Cla-Chr8:18121344 Cla08g01531 Cla-Chr8:28061442 6.52E-46 transposed
Cla05g01999 Cla-Chr5:31759370 Cla08g01531 Cla-Chr8:28061442 1.16E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g833 . . . . . . . . . Cmo12g00452 . Cma09g00203 . Car12g00481 Sed11g0987 Cpe06g00138 Cpe07g00455 Bhi04g00299 Tan02g1908 Cmetu03g1436 . Hepe10g0694 . Lcy13g2022 Cla08g01531 Cam08g2024 Cec08g1598 Cco08g1734 Clacu08g1712 . Cre08g1493 Cone4ag1550 Cone7ag1402 . . Lsi04g01599 Csa04g02369 . Cme03g01996 . . . Bda01g01456 . . . . Sed01g2628 . Cmo09g00197 Cma12g00511 . . Car09g00171 . . Bhi09g03385 Tan01g4845 Cmetu07g1797 . Hepe01g1727 . . Cla05g01999 Cam05g2150 Cec05g2167 Cco05g2215 Clacu05g2142 Cmu05g2012 Cre05g2138 Lsi08g01433 Csa02g02007 Chy07g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003030 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 2 2 1 2 2 2 2 3 2 1 3 4 1 53