Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01534 ATGGGGGAAGGCACCTTTGTTTCAAGATTCTTACAAAAGTCAATCATTGAAGTGAAGGAAAAGGGCACAGAAGCTGCTGCATTTTCACCTTTGAATGCATTAACTGGTTGCCCGAGGCCGCTGTGTAGACATAATACACTTTGTCGCCGACCACCCCTTCTTGTTCGCAATCAGAGAAGACGCCGCAGGAGCTTTGCTTTTTGTTGGGAAAGTACTAAGTCCTACGCTGTCTCATCACGCCCTCTAGGTTTTAAAACAATCCTTGATCGGACTATTGATGAGTGGAGAGCTTCGAATGGAAAACAAATCATGACATCACAATCCGACGTCGCTTTGAGCATTGCGAAGCGGCTTATCCAAGATGAAGGAAAAGACTCGAACGTTGTGATTTCGCCATTGTCAATCCAAGTTTTGCTTAGCCTTGTTGGTGCTTGGTGTAGTGGCCCAACTCTTGATCAGCTTCTATCATTCTTAAAATCAAACTCCATTGAGCAACTCAACCAATTTGGTTCAATAATAACATCCGATGTCTTGGGCGATGCTTCTCCCAGCTGTGGACCAAAACTCTCATTTGCCAGTGGAGTTTGGGTCAACCAATTACACTCTCTCAAGCCTTCTTTCAAACACATTGTGGACACTTATTATAAAGCCACCCTCCGAAAAGCCGATTTTGAGAATAAGGCTGAAGAAGTGATTTCAGAAGTGAACACATGGGTTAACAACCATACCAAAGGACTCATCACCAACATTCTTCCCCCTGGATCCGTTGAAAGTCTTACTGAGCTCATCCTTGCAAATGGCCTCTACTTCAAAGGGGATTGGAGAAATGAATTTGATGCTTCATTAACAAAAAAGGAGAACTGGAAAGAGCAACATATAGCTGCGTATGAGGTGTTTAAGGTTCTTTCAATGCCATATAGAGAAGGGCGATACGATGAAGAACACTCTGAGGCCGGGTTCATCAACCGCCACATTCCGCAGCGACGAGTTGAGGTGGGTGAATTAAAGATTCCCAAATTCAAAATTTCTTTTGGGGTTGAAGTTTTGATTGGATTTGGCATTCCAATCAGGGGGATTGCATTCATTGAAGGGAACGAAAAGGGCAAAGAAGCTGCAGTTGCTATTGTCGCTCGCCTCCGTAGTTGTGATCGAATGAGGCTTCCTTCAGAAATAATAGACTTCGTCGCTGGTCATCCATTTTGTTCGCAACAGAGAAGACGTGACAGGAACTTTACTTTTTGTTGGGAAACTGCTAAATCCCACTGTCCAATTAGTAAAAAACAACTTTCACTTCAAAGCCATGGCGACGTCGCCTTAGCCATTACCAAGCACCTTCTCCAAAACGAAGCCAAGGCCTCCAACGTTGTCCTCTCGCCCTTGTCAATCCATGTCCTTCTCAGCCTTATCGCTGCCGGTTCCAAAGGCCCCCCGCTGGATCAACTTCTTTCCTTCCTCAAATCCAACTCCACCGACAACCTCAACTCCTTCGCTTCTCAAATCGTAGCCACGGTCTTCGCCGATGCCTCTCCCAGCGGCGGACCTCGCCTCGCATTTGCCAATGGGGTTTGGGTCGATCAATCACTTCCTCTCAAGCCTTCTTTCAAACAGGTTGTCGACACTCTTTATAAAGCCAAGCTCAGCCAAGCTGATTTCAAGACTAAGGCTGTTGAAGTGACTTCAGAAGTAAATTCATGGGCTGAAAAGCAAACTAATGGACTTATCACAGAGGTTCTTCCCTCTGGATCAGTTGATAGTCTCTCTAAGCTCATCCTTGCTAATGCACTCTACTTCAAAGGGGAATGGGAAGAGAAATTTGATGCTTCGAAAACAGAGAAACAAGATTTCTACCTTCTTGATGGGAGTTCAGCGGAGGTTCCCTTTATGACCAGCAAGAATAAGCAATATATAGCTGCCTTTGATGGATTTAAAGTTCTTGGATTGCCATACAAACAAGGATCTGACCCACGTCGTTTTTCAATGTACATCTTTCTTCCAGATTCGAAGGATGGATTGCCATCTTTGATTCAAAAATTAGATTCCCAATCCGGGTTCATTGACTGCCACATTCCATATGAAAAACTTAAAGTGGGCGAATTCAAGATTCCAAAGTTCAAAATTTCTTTTGGGATTGAAGTTTCCAATGTTCTGAAGGGGTTAGGATTGGTGTTACCTTTCTCTGAAGGAGGTTTGTTAGAAATGGTGGAGACCCAAATGGCTCAAGGCCTTCATGTTTCAAAAATATTCCATAAGTCATTCATTGAGGTTAATGAAGAAGGCACAGAAGCTGCAGCTGCTTCATCTGGTGTCATAAGATTGAGGGGTTTGCCTTCTGTAGACACAATCGACTTCGTTGCCAACCATCCTTTCTTGTACGTGATAAGGGAAGACAAGACAGAATCTTTGCTTTTCATTGGGCAGGTGCTAAACCCTCTTGTCCATTGA 2442 44.1 MGEGTFVSRFLQKSIIEVKEKGTEAAAFSPLNALTGCPRPLCRHNTLCRRPPLLVRNQRRRRRSFAFCWESTKSYAVSSRPLGFKTILDRTIDEWRASNGKQIMTSQSDVALSIAKRLIQDEGKDSNVVISPLSIQVLLSLVGAWCSGPTLDQLLSFLKSNSIEQLNQFGSIITSDVLGDASPSCGPKLSFASGVWVNQLHSLKPSFKHIVDTYYKATLRKADFENKAEEVISEVNTWVNNHTKGLITNILPPGSVESLTELILANGLYFKGDWRNEFDASLTKKENWKEQHIAAYEVFKVLSMPYREGRYDEEHSEAGFINRHIPQRRVEVGELKIPKFKISFGVEVLIGFGIPIRGIAFIEGNEKGKEAAVAIVARLRSCDRMRLPSEIIDFVAGHPFCSQQRRRDRNFTFCWETAKSHCPISKKQLSLQSHGDVALAITKHLLQNEAKASNVVLSPLSIHVLLSLIAAGSKGPPLDQLLSFLKSNSTDNLNSFASQIVATVFADASPSGGPRLAFANGVWVDQSLPLKPSFKQVVDTLYKAKLSQADFKTKAVEVTSEVNSWAEKQTNGLITEVLPSGSVDSLSKLILANALYFKGEWEEKFDASKTEKQDFYLLDGSSAEVPFMTSKNKQYIAAFDGFKVLGLPYKQGSDPRRFSMYIFLPDSKDGLPSLIQKLDSQSGFIDCHIPYEKLKVGEFKIPKFKISFGIEVSNVLKGLGLVLPFSEGGLLEMVETQMAQGLHVSKIFHKSFIEVNEEGTEAAAASSGVIRLRGLPSVDTIDFVANHPFLYVIREDKTESLLFIGQVLNPLVH 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28074016 28081726 + ClCG08G015550.1 Cla08g01534 279189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01534 813 PANTHER SERPIN-ZX-LIKE 315 348 - -
Cla08g01534 813 PANTHER SERPIN-ZX-LIKE 113 310 - -
Cla08g01534 813 SUPERFAMILY Serpins 92 400 IPR036186 -
Cla08g01534 813 SMART serpin2 439 810 IPR023796 -
Cla08g01534 813 Pfam Serpin (serine protease inhibitor) 435 810 IPR023796 -
Cla08g01534 813 Pfam Serpin (serine protease inhibitor) 106 317 IPR023796 -
Cla08g01534 813 SUPERFAMILY Serpins 421 810 IPR036186 -
Cla08g01534 813 PANTHER SERPIN-ZX-LIKE 436 811 - -
Cla08g01534 813 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 315 348 IPR000215 GO:0004867|GO:0005615
Cla08g01534 813 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 113 310 IPR000215 GO:0004867|GO:0005615
Cla08g01534 813 CDD serpinP_plants 436 810 - -
Cla08g01534 813 Gene3D - 601 805 IPR042185 -
Cla08g01534 813 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 436 811 IPR000215 GO:0004867|GO:0005615
Cla08g01534 813 Gene3D - 2 33 - -
Cla08g01534 813 Gene3D Antithrombin, subunit I, domain 2 98 309 IPR042178 -
Cla08g01534 813 Gene3D Antithrombin, subunit I, domain 2 453 757 IPR042178 -
Cla08g01534 813 ProSitePatterns Serpins signature. 783 793 IPR023795 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01534 K13963 SERPINB; serpin B - csv:101202809 679.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01533 Cla-Chr8:28073677 Cla08g01534 Cla-Chr8:28074016 4.18E-20 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g831 . . . . . . . . Cmo05g00215 . . . . . Sed08g1817 . . Bhi04g00301 Tan02g1904 Cmetu03g1500 . Hepe10g0696 . Lcy13g2026 Cla08g01534 Cam08g2027 Cec08g1603 Cco08g1738 Clacu08g1716 . Cre08g1499 . . Cone17ag1302 . . Csa04g02371 . Cme03g02000 Blo17g00830 . Bda08g01319 . . Bpe05g00068 . . . . . . Cma05g00209 . . Cpe11g00174 . . . . . . . . . . . . . . . Lsi08g01436 Csa02g02005 Chy07g00100 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000825 2 1 6 2 1 2 0 2 2 4 1 2 3 4 4 7 2 3 2 2 4 1 2 5 5 4 4 7 5 1 90