Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01536 ATGCCTTTCTTTCACAAAAGCGCTTCAAATTCTCGGCTTCAACAGAAGGTACCCAATTCTGAATTTTCCGTTGGACTACCGGAACCGCTCGTTCAACGGCGGCTCACCAGACAGAGGAAGCTCCGGCATCTTACGGATAGGGACGTTGGCTTTGAACACCCCCGATCATCTCCCGATTGCCCCGATTTTTCGGCAAAACCTAGATCGCCTCTAGGGGGTTCCGAACGTTGGTCCTCGTCGGCTTTGCCCCTGCCTTTGCCTCTTCCGGAGTTCTTTCCGGTTCAGAGCCCGGAGTCCGGTTCTTGGAATTCTGGCCAAGGGCGTGTTGGATCGCCTATTGAAACTCCGGTCCGAAATTCCGCTATTAAAACTGTTAGGAAGAACTCTGATCGTGCAACAACGAATGTAAGTAAAAGTTTGGGCCACAATCAAAGGCGAGTTGCTATAGATTTGACCTTGGAAGTTAATAATGGCAATTCAGGAGGGGCCGGGGCTACCACATTTACAAGCCCTCAAAGCCTCTCTGTGAATCCGGAGAAATCGAATCCGAATAAGGAGTTTCTTTTTGGTTGTTCAGATCAGCTTCCAAACAACAAAGGCAGGGGTTCCCCTACTTATCCGAGTATTGAAAGGGGTAACTACGATTTGACACCTAAGAATTCGTCGTCAAAGAGTGCGCCAACGAGCATTTTGCCGAGTCCTGCTGTTAGCCCACGAAGAACACACACTGGAAATTTTTTTGTTTCTGGTTTGACTCACCATGAATACCAGGAATCTCCTTCTAATAATTCTCCTAAAGTACCACCCCTTAAAACTGCACATAGTTCTCAACCTTCCCCTCTCCATAGCCCGATAGCCCGAGGTTCCATAAGCAATCCCAGATCTCCTAATGATGTGACATTTCTCCCACATCCCAAGTTACAAAAAGATAGTAGTATAGATCGGTCTGAAAGCCATGGTCATGTCAATGCCCATCCATTGCCCCTTCCTCCTCCATTAGTAGCCTCTTCACAAGCATCTCCACAATCTCTTCCGTCAAATGTTCATCATGTTTTTGAGAAGCCATACATTTCATCTATGAAAGGTCAGTGGCAAAAAGGAAAGCGAATTGGGCGTGGTACATTCGGAAGCGTTTATCTAGCAACCAACAGAGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATCTGCTGAATGTATGAAGCAACTAGAGCAGATTGGTGATCGTTTCTATATATATTTGGAGTATGTTCATCCTGGTTCAATAAATAAATATGTTCGTGAACATTGTGGAGCCATTACAGAATCTATTGTTCGCAATTTCACCCGCCATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAGACAATTCACAGAGATATCAAAGGTGCAAACTTGCTAGTTGATTCATCAGGCGTTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGAACTGGATGGCTCCGGAGGTCATAAAGGCTGCTATGTTGAAAGATGCCAACCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCATGGTCTGAGTTTGAAGGGCATCAAGCTATGTTCAAGGTGTTGAATAAAACCCCGCCTACCCCAGAAAAGCTATCTCCTGAAGGGAAAGACTTCCTCCAGTGTTGCTTTCAGAGGAATCCAGCTGACAGACCAACAGCCTCGGTGCTCCTTGACCATCCTTTCTTAAGATCCTCAAATGACTCAAATGTTTCAATCCCCACGTCATCATTTTCAACAATGAACCTCTTGGAAAAATTGTTGAGTCCAAAGGACCCGCTTGATCCCAAAGGAGATCAGGCACAAAACTCTCCTGGAACTTCGGCTTCAAATGATTATTTGCTGTGCCATCTTGGTGTCGGATCTTGTAAGTTTTCCTTGCAACTGACTCCCATTTTTAATCGAATCGCAGTCCTTCAACGAACATTGCAAGCAATGTTCCTGCCAATGCTGTTACCAATCATCACTTTTCTATTTCAAGGACTCATAAAAGGGAAGTGCTGCACCTCTGAGCTAGGGTTGTGGATTTTTACAGGAAAATACTTGACCGAGGAATTTGATAATCTGGAGAGGCTTCACGTGACAGTACAGAGGCATTTCAGCCAATGCTACGTAGCCAGTTTGTTTAAAGAAACAGTAACTTTTGAAATTATGCGCATGCTCAGGGTTCTTATTGTTTCCATCAAAATTACAGTAAAAGAAACATCTTTTTCTCCATTGGTCACTTTTGTCTCTTGCTCCGGCCAAATGTCACTCCCAATTGAACAACAATCTCCGCCGGCGTTGGGAATGCAGCAAAATTATGGCGGCCATCCGGGCAGCGGCTCCGTCGGTCCGGTCATCGGAGTCCTTGTCGTCATCATTGTGTTCGCCGTAATCGCCGTCGTGGTCGGGCGGCTGTGCTCGGGAAGGAGCATAATGGGCTACGGTCATTTCGACTTGGAGAGCTGGGCGGAGACAAAATGCTCCTCTTGCATCGACGGAAGGATCAGCCCACCACCGCCGAGGGTTAATGTCTCCGCCGCCGCCGCCGCCGCCGCCTCTCTTCCGGCCGGGACAATGGCGGTCCGAACCCAGCAAGAAACTAAACAAGAAGAACCAGCTTCTCAAAATCCACCTGCCAACGCTTGA 2751 46.64 MPFFHKSASNSRLQQKVPNSEFSVGLPEPLVQRRLTRQRKLRHLTDRDVGFEHPRSSPDCPDFSAKPRSPLGGSERWSSSALPLPLPLPEFFPVQSPESGSWNSGQGRVGSPIETPVRNSAIKTVRKNSDRATTNVSKSLGHNQRRVAIDLTLEVNNGNSGGAGATTFTSPQSLSVNPEKSNPNKEFLFGCSDQLPNNKGRGSPTYPSIERGNYDLTPKNSSSKSAPTSILPSPAVSPRRTHTGNFFVSGLTHHEYQESPSNNSPKVPPLKTAHSSQPSPLHSPIARGSISNPRSPNDVTFLPHPKLQKDSSIDRSESHGHVNAHPLPLPPPLVASSQASPQSLPSNVHHVFEKPYISSMKGQWQKGKRIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAECMKQLEQIGDRFYIYLEYVHPGSINKYVREHCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPNWMAPEVIKAAMLKDANPDLALAVDIWSLGCTIIEMLNGKPPWSEFEGHQAMFKVLNKTPPTPEKLSPEGKDFLQCCFQRNPADRPTASVLLDHPFLRSSNDSNVSIPTSSFSTMNLLEKLLSPKDPLDPKGDQAQNSPGTSASNDYLLCHLGVGSCKFSLQLTPIFNRIAVLQRTLQAMFLPMLLPIITFLFQGLIKGKCCTSELGLWIFTGKYLTEEFDNLERLHVTVQRHFSQCYVASLFKETVTFEIMRMLRVLIVSIKITVKETSFSPLVTFVSCSGQMSLPIEQQSPPALGMQQNYGGHPGSGSVGPVIGVLVVIIVFAVIAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRISPPPPRVNVSAAAAAAASLPAGTMAVRTQQETKQEEPASQNPPANA 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28087275 28093536 + ClCG08G015570.2 Cla08g01536 279191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01536 916 ProSiteProfiles Protein kinase domain profile. 364 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01536 916 MobiDBLite consensus disorder prediction 162 182 - -
Cla08g01536 916 MobiDBLite consensus disorder prediction 96 110 - -
Cla08g01536 916 MobiDBLite consensus disorder prediction 96 135 - -
Cla08g01536 916 Gene3D Transferase(Phosphotransferase) domain 1 361 630 - -
Cla08g01536 916 ProSitePatterns Protein kinases ATP-binding region signature. 370 393 IPR017441 GO:0005524
Cla08g01536 916 MobiDBLite consensus disorder prediction 117 135 - -
Cla08g01536 916 MobiDBLite consensus disorder prediction 7 21 - -
Cla08g01536 916 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 654 - -
Cla08g01536 916 PANTHER - 1 654 - -
Cla08g01536 916 SUPERFAMILY Protein kinase-like (PK-like) 357 620 IPR011009 -
Cla08g01536 916 MobiDBLite consensus disorder prediction 162 346 - -
Cla08g01536 916 MobiDBLite consensus disorder prediction 892 916 - -
Cla08g01536 916 MobiDBLite consensus disorder prediction 41 55 - -
Cla08g01536 916 MobiDBLite consensus disorder prediction 1 79 - -
Cla08g01536 916 SMART serkin_6 364 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01536 916 MobiDBLite consensus disorder prediction 214 298 - -
Cla08g01536 916 MobiDBLite consensus disorder prediction 893 916 - -
Cla08g01536 916 Pfam Protein kinase domain 365 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00892 Cla-Chr5:8826684 Cla08g01536 Cla-Chr8:28087275 5.92E-84 dispersed
Cla06g00558 Cla-Chr6:6766067 Cla08g01536 Cla-Chr8:28087275 3.58E-54 dispersed
Cla08g01536 Cla-Chr8:28087275 Cla02g00871 Cla-Chr2:12323447 3.57E-39 dispersed
Cla01g01631 Cla-Chr1:31110216 Cla08g01536 Cla-Chr8:28087275 1.14E-107 wgd
Cla02g00579 Cla-Chr2:6250897 Cla08g01536 Cla-Chr8:28087275 5.79E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80762 PF00069 Pkinase 1.80E-54 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01536 - - cmo:103487921 1117.06