Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01552 | ATGGGAATCTCTAACCTCTCATACGAGGAATGTCGTCGCAAAAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGACTCTTCCCCTTCCAAGTCCTCCCCTAGTAAGCAGGTCAAGGCTCGCGTGATGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAGCAATCAGCCCCTGTTTACGCTGAAGTTCTTGTTGATCGGCTGGCGATTCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTCTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTCAGGAGTTACAATCCGGATTGGAGCCGAATTATCCAATCTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTGCTCATTTCTGCAAGATGCACCTTCCAAAGAATGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGCCTTTTCAATTGCTCATAAGTTGGCAGATGGAGATGCTGTGGTTTTTCAACACATTAAACCTACAGCCTGCAAGGTCTACATTTTCAGGGCGGATGGTTCTAAAGAGGATAGTGATTCTAACAACCAAACCCTACGAACCCAGGAAGAAGAAGAAGAAGAGACCATGGGGATCGCAAACCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCCCCTGTTTACGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTTTCAAATCGGGTTTATGCTTCGGATGACGCAAGAAAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGATCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGTTTTTGGCTGGGCCTTCCTTCTCATTTCTGCAAGATCCATCTTCCAAATCGTGATGGAGTCATGACTTTAATAGATGAAGATGGCGATGAGTATTCGACTATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTTCCGTTGCTCATAAGTTGGCAGATGGGGATGCTGTAGTTTTTCAATTCATTAAACCTACAAGATGCAAGGTGTACATTCTTAGGGCGAATAGTTCCAGACAAGATAGCGATTCTAACAGTAGCTAA | 1413 | 44.73 | MGISNLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQVKARVMQKQLVVVRRSSRVAKQSAPVYAEVLVDRLAIPRRISRARDFSDQFYASDEARKNAFERAQELQSGLEPNYPICIKSMVRSHVSGCFWLGLPAHFCKMHLPKNDGVMTLIDEDGDEYPIIYLARKTGFSGGWKAFSIAHKLADGDAVVFQHIKPTACKVYIFRADGSKEDSDSNNQTLRTQEEEEEETMGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRISKARDFSNRVYASDDARKNAFERAEQLQSGLDPNYPNFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGDEYSTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTRCKVYILRANSSRQDSDSNSS | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28209545 | 28217637 | + | ClCG08G015750.1 | Cla08g01552 | 279207 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01552 | 470 | CDD | B3_DNA | 366 | 457 | IPR003340 | GO:0003677 | |
Cla08g01552 | 470 | CDD | B3_DNA | 125 | 216 | IPR003340 | GO:0003677 | |
Cla08g01552 | 470 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN | 243 | 463 | - | - | |
Cla08g01552 | 470 | SUPERFAMILY | DNA-binding pseudobarrel domain | 361 | 459 | IPR015300 | - | |
Cla08g01552 | 470 | Coils | Coil | 247 | 267 | - | - | |
Cla08g01552 | 470 | Pfam | B3 DNA binding domain | 368 | 458 | IPR003340 | GO:0003677 | |
Cla08g01552 | 470 | Pfam | B3 DNA binding domain | 128 | 217 | IPR003340 | GO:0003677 | |
Cla08g01552 | 470 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 218 | IPR015300 | - | |
Cla08g01552 | 470 | MobiDBLite | consensus disorder prediction | 220 | 242 | - | - | |
Cla08g01552 | 470 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 243 | 463 | IPR044837 | - | |
Cla08g01552 | 470 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 1 | 223 | IPR044837 | - | |
Cla08g01552 | 470 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 218 | IPR003340 | GO:0003677 | |
Cla08g01552 | 470 | Gene3D | - | 101 | 219 | IPR015300 | - | |
Cla08g01552 | 470 | Gene3D | - | 343 | 460 | IPR015300 | - | |
Cla08g01552 | 470 | MobiDBLite | consensus disorder prediction | 220 | 239 | - | - | |
Cla08g01552 | 470 | ProSiteProfiles | B3 DNA-binding domain profile. | 368 | 459 | IPR003340 | GO:0003677 | |
Cla08g01552 | 470 | SMART | B3_2 | 368 | 459 | IPR003340 | GO:0003677 | |
Cla08g01552 | 470 | SMART | B3_2 | 127 | 218 | IPR003340 | GO:0003677 | |
Cla08g01552 | 470 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN | 1 | 223 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g01066 | Cla-Chr5:10999675 | Cla08g01552 | Cla-Chr8:28209545 | 4.76E-36 | dispersed | |
Cla08g01552 | Cla-Chr8:28209545 | Cla05g01994 | Cla-Chr5:31726998 | 4.10E-09 | dispersed | |
Cla02g00594 | Cla-Chr2:6446635 | Cla08g01552 | Cla-Chr8:28209545 | 9.90E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61614 | PF02362 | B3 | 1.40E-12 | CL0405 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01552 | - | - | csv:101205473 | 369.392 |