Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01552 ATGGGAATCTCTAACCTCTCATACGAGGAATGTCGTCGCAAAAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGACTCTTCCCCTTCCAAGTCCTCCCCTAGTAAGCAGGTCAAGGCTCGCGTGATGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAGCAATCAGCCCCTGTTTACGCTGAAGTTCTTGTTGATCGGCTGGCGATTCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTCTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTCAGGAGTTACAATCCGGATTGGAGCCGAATTATCCAATCTGTATAAAGTCGATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTGCTCATTTCTGCAAGATGCACCTTCCAAAGAATGATGGAGTAATGACTTTAATAGATGAAGATGGTGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGCCTTTTCAATTGCTCATAAGTTGGCAGATGGAGATGCTGTGGTTTTTCAACACATTAAACCTACAGCCTGCAAGGTCTACATTTTCAGGGCGGATGGTTCTAAAGAGGATAGTGATTCTAACAACCAAACCCTACGAACCCAGGAAGAAGAAGAAGAAGAGACCATGGGGATCGCAAACCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCCCCTGTTTACGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTTTCAAATCGGGTTTATGCTTCGGATGACGCAAGAAAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGATCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGTTTTTGGCTGGGCCTTCCTTCTCATTTCTGCAAGATCCATCTTCCAAATCGTGATGGAGTCATGACTTTAATAGATGAAGATGGCGATGAGTATTCGACTATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTTCCGTTGCTCATAAGTTGGCAGATGGGGATGCTGTAGTTTTTCAATTCATTAAACCTACAAGATGCAAGGTGTACATTCTTAGGGCGAATAGTTCCAGACAAGATAGCGATTCTAACAGTAGCTAA 1413 44.73 MGISNLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSSPSKQVKARVMQKQLVVVRRSSRVAKQSAPVYAEVLVDRLAIPRRISRARDFSDQFYASDEARKNAFERAQELQSGLEPNYPICIKSMVRSHVSGCFWLGLPAHFCKMHLPKNDGVMTLIDEDGDEYPIIYLARKTGFSGGWKAFSIAHKLADGDAVVFQHIKPTACKVYIFRADGSKEDSDSNNQTLRTQEEEEEETMGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRISKARDFSNRVYASDDARKNAFERAEQLQSGLDPNYPNFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGDEYSTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTRCKVYILRANSSRQDSDSNSS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28209545 28217637 + ClCG08G015750.1 Cla08g01552 279207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01552 470 CDD B3_DNA 366 457 IPR003340 GO:0003677
Cla08g01552 470 CDD B3_DNA 125 216 IPR003340 GO:0003677
Cla08g01552 470 PANTHER B3 DOMAIN-CONTAINING PROTEIN 243 463 - -
Cla08g01552 470 SUPERFAMILY DNA-binding pseudobarrel domain 361 459 IPR015300 -
Cla08g01552 470 Coils Coil 247 267 - -
Cla08g01552 470 Pfam B3 DNA binding domain 368 458 IPR003340 GO:0003677
Cla08g01552 470 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Cla08g01552 470 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Cla08g01552 470 MobiDBLite consensus disorder prediction 220 242 - -
Cla08g01552 470 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 243 463 IPR044837 -
Cla08g01552 470 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 223 IPR044837 -
Cla08g01552 470 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
Cla08g01552 470 Gene3D - 101 219 IPR015300 -
Cla08g01552 470 Gene3D - 343 460 IPR015300 -
Cla08g01552 470 MobiDBLite consensus disorder prediction 220 239 - -
Cla08g01552 470 ProSiteProfiles B3 DNA-binding domain profile. 368 459 IPR003340 GO:0003677
Cla08g01552 470 SMART B3_2 368 459 IPR003340 GO:0003677
Cla08g01552 470 SMART B3_2 127 218 IPR003340 GO:0003677
Cla08g01552 470 PANTHER B3 DOMAIN-CONTAINING PROTEIN 1 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01066 Cla-Chr5:10999675 Cla08g01552 Cla-Chr8:28209545 4.76E-36 dispersed
Cla08g01552 Cla-Chr8:28209545 Cla05g01994 Cla-Chr5:31726998 4.10E-09 dispersed
Cla02g00594 Cla-Chr2:6446635 Cla08g01552 Cla-Chr8:28209545 9.90E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61614 PF02362 B3 1.40E-12 CL0405 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01552 - - csv:101205473 369.392