Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01572 ATGGACGGTGCTGATGGGACTGTGAGGCTTGGGGCAGTGAACTTGAAGCCGGATCGGAGCGCCTTTGATTTAGGCCCCGATGTGTCTGTTTCGTCTCCGGTCACAAGGCAGAAAGCCGCTGCTGCTAAACAGTTCATAGAGAATCATTACAAGAACTATCTCCAAGGTCTTCAGGATCGCAAAGACAGACGAAGAACTCTTCAACGAAGAGCGCAAGAAGCTCAGATGTCGGCTGAAGAACAAGAAGAGATGCTGAGGAACTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATCGATGACTTTGAGCAATTAACAGTTATTGGTAAAGGTGCATTCGGCGAGGTTAGATTGTGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTTTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGATTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGCCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGACAAGTATTCAAGTATACTTTTGAATGAGCAAGACCTAACTGCCCAGCAGGCCAAAAATGAAGGTCAAGGTCATGCTGACTCTAATGGATCCCATTGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGCCGTGCATTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTACTGCTTAAGAAAGGGTATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTTCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCCGAGGAACCAAGAATTTCAGAGGAAGCTAAGGACCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACACGAGGAGTAGAAGAAATAAAGGCACATCCATGGTTCAAAGGCATTCAATGGGATAAGCTGTATGAAATGGAAGCTGCATACAAACCAACTGTTACTGGAGAACTAGACACTCAGAACTTTGAGAAGTTTCCTGAAGTTCAAGACCCTCCCTCTGAAATGCCAACTGTTGGACCTTGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACAGATGTGCATTCAAACACATCATCAAAATCACCATCTCTAGTTTCCTTGTTGGGTCGAATAGACTTGCAAGAAACAGTGATACCAGAAGTTGAACAAAAGCAGGAAGCATAA 1572 42.11 MDGADGTVRLGAVNLKPDRSAFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRTLQRRAQEAQMSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNEQDLTAQQAKNEGQGHADSNGSHWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPRISEEAKDLISHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLESTGTDVHSNTSSKSPSLVSLLGRIDLQETVIPEVEQKQEA 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28373553 28379504 - ClCG08G015970.1 Cla08g01572 279227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01572 523 ProSiteProfiles Protein kinase domain profile. 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01572 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 509 - -
Cla08g01572 523 Coils Coil 57 101 - -
Cla08g01572 523 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla08g01572 523 CDD STKc_NDR_like 106 475 - -
Cla08g01572 523 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 509 - -
Cla08g01572 523 SMART pkinase_C_6 412 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cla08g01572 523 Gene3D Phosphorylase Kinase; domain 1 430 441 - -
Cla08g01572 523 Pfam Protein kinase domain 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01572 523 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Cla08g01572 523 SMART serkin_6 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01572 523 Gene3D Phosphorylase Kinase; domain 1 77 191 - -
Cla08g01572 523 SUPERFAMILY Protein kinase-like (PK-like) 85 463 IPR011009 -
Cla08g01572 523 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cla08g01572 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cla08g01572 523 Gene3D Transferase(Phosphotransferase) domain 1 309 429 - -
Cla08g01572 523 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01626 Cla-Chr6:29787123 Cla08g01572 Cla-Chr8:28373553 1.06E-60 dispersed
Cla08g01572 Cla-Chr8:28373553 Cla09g00744 Cla-Chr9:7341099 0 dispersed
Cla08g01572 Cla-Chr8:28373553 Cla03g01479 Cla-Chr3:30288766 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80763 PF00069 Pkinase 1.10E-64 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01572 K08790 - csv:101222805 1005.36