Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01575 ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGGAAACGGCGGAGGAGGCGGAAGACCTCCGGCGAACTATCCATTAGCGCGACAATCATCGATCTACTCGCTGACCTTCGATGAGTTTCAGAGCATGGGGAGTATAGGCAAGGATTTTGGGTCGATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGCTGTTGATAAAGAAGGGGCTGGTAGTGTTGGTCGTAGTGGTGGGTATTTGCAGAGACAGGGCTCCTTGACGCTGCCTCGGACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGATGGGGCTACTGTTGCTTCTAATTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAGGATACTCAGGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAATAACACTGGTTTTGGAATTGGTTTTCAGCGGCAGGCTAAAGTTCCTGAGAATAATAATCATATTCCAATTCAATCGTCGAACTTATCGCTGAATGTCAATGGAGTCAGAACACATCAGCCGCAGCCAATTTTTCCAAAGCAGCCTGCTGTGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGGGGAATTATGGGGATTGGAGATCAAGGGTTGAATACAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTTAATATAGCAGCTGCTCCGTTACCTATTGCAACAGAATCGCCAAGGGACCAACTATCATCTGATGGGATTGGTAAAAGCAATGGTGATACCTCGTCTGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGGGGGAGGAGAAGTAACGGAATTGTCGACAAGGTTGTCGAGAGGAGGCAACGGAGAATGATTAAAAACAGAGAGTCCGCTGCAAGATCGCGGGCTCGAAAGCAGGCCTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCAGAAGAACCGGGCATTGGAAGTAATGGATAAGCAACAAGGAATAAAGAAGCGATGCTTAAGACGAACGCAGACTGGCCCATGGTGCCGTGTAGCATATGTCTCAAGGCGTCTTGCTTGCAGAGTATCCTCCTCCACCCTCTGCCATGGAGAGGGAAATAAGTTTTTTGTGGCATTTCCTGATATGGCCCGACTGCTGCTGTGGTTGTGGGTAAATGTCAATCCTGAATGCAGGATTCATCAGCGTTCAATTCATTGCATGTCAACTGCTGCAACTGCCGTTCGATTTTCCTTTGTAATCTCTGCATCATGA 1461 47.43 MNFKDFGNDPSAGNGGGGGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAVDKEGAGSVGRSGGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHASAKDGATVASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIGFQRQAKVPENNNHIPIQSSNLSLNVNGVRTHQPQPIFPKQPAVTYGSQLALPSDGQLASPGIRGGIMGIGDQGLNTNLMQGSALQGGRMGVVNIAAAPLPIATESPRDQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGIVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAEIMEMQKNRALEVMDKQQGIKKRCLRRTQTGPWCRVAYVSRRLACRVSSSTLCHGEGNKFFVAFPDMARLLLWLWVNVNPECRIHQRSIHCMSTAATAVRFSFVISAS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28433789 28437523 + ClCG08G016000.1 Cla08g01575 279230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01575 486 CDD bZIP_plant_BZIP46 333 385 - -
Cla08g01575 486 MobiDBLite consensus disorder prediction 286 315 - -
Cla08g01575 486 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 198 411 IPR043452 GO:0003700|GO:0045893
Cla08g01575 486 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 5 174 IPR043452 GO:0003700|GO:0045893
Cla08g01575 486 Coils Coil 349 386 - -
Cla08g01575 486 Gene3D - 331 387 - -
Cla08g01575 486 Pfam bZIP transcription factor 333 385 IPR004827 GO:0003700|GO:0006355
Cla08g01575 486 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 336 351 IPR004827 GO:0003700|GO:0006355
Cla08g01575 486 MobiDBLite consensus disorder prediction 287 311 - -
Cla08g01575 486 SUPERFAMILY Leucine zipper domain 333 381 IPR046347 GO:0003700|GO:0006355
Cla08g01575 486 SMART brlzneu 329 393 IPR004827 GO:0003700|GO:0006355
Cla08g01575 486 MobiDBLite consensus disorder prediction 1 26 - -
Cla08g01575 486 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 331 382 IPR004827 GO:0003700|GO:0006355
Cla08g01575 486 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 198 411 - -
Cla08g01575 486 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01575 Cla-Chr8:28433789 Cla10g01807 Cla-Chr10:33973432 4.25E-57 dispersed
Cla10g00054 Cla-Chr10:595667 Cla08g01575 Cla-Chr8:28433789 1.05E-17 transposed
Cla02g00607 Cla-Chr2:6651246 Cla08g01575 Cla-Chr8:28433789 4.24E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61615 PF00170 bZIP_1 4.80E-13 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01575 K14432 - csv:101223043 716.842