Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01577 | ATGGATATGGCGGACGCGGAGCATGCAAGTAAGTGGGGAAGAGAGGAGATGGATATTGTGAGTGTGATTGAGCAGATGGGAAAATTTGGAGAGAATTTAGAATATAATGAAGTGGCAGCTTCTTCTTCGGATTTTGCTTTTGGTAGTCCCAATATTGGTGTAACTGTAACTACTTCCACTTCACCTCCCATTTTTCCTTCTTTTAATAATCTCCCACCATCCACCGCCCTTTCAATCAGTAACGCCACTGCACCACCGCCTTTTCCACCCTATTCCGCCGCTGCCCGCTCCAGATACCATCTTCCCGCCACCCCAATTTCTGGCATGAAGGGAGAGGGGAAGGAATCAGAGTCAATGGGAGCGATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGTCGGAATGTTAAAATTTCAAAAGATCCTCAGAGTGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGCGAAAGAATTAGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACGGCCTCCATGTTAGACGAGGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTTCATTCACTCCAAATTGCCGCCGCCGCCGCCACCAACCACCCCCCCTCCGCCGCCGCCTACCCCTTTCCCACCGCCATCTTCTCTGCTGGGACTACTAATTATAATAAAAAACATCACTACCTGGAGGATGCTTCATTTTAA | 756 | 48.02 | MDMADAEHASKWGREEMDIVSVIEQMGKFGENLEYNEVAASSSDFAFGSPNIGVTVTTSTSPPIFPSFNNLPPSTALSISNATAPPPFPPYSAAARSRYHLPATPISGMKGEGKESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAAAATNHPPSAAAYPFPTAIFSAGTTNYNKKHHYLEDASF | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28452061 | 28453168 | - | ClCG08G016020.1 | Cla08g01577 | 279232 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01577 | 251 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 152 | 201 | IPR011598 | GO:0046983 | |
Cla08g01577 | 251 | Coils | Coil | 198 | 218 | - | - | |
Cla08g01577 | 251 | Gene3D | - | 149 | 211 | IPR036638 | GO:0046983 | |
Cla08g01577 | 251 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 60 | 242 | - | - | |
Cla08g01577 | 251 | Pfam | Helix-loop-helix DNA-binding domain | 162 | 201 | IPR011598 | GO:0046983 | |
Cla08g01577 | 251 | SMART | finulus | 158 | 207 | IPR011598 | GO:0046983 | |
Cla08g01577 | 251 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 60 | 242 | IPR045843 | GO:0003700|GO:0006355 | |
Cla08g01577 | 251 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 156 | 210 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g02049 | Cla08g01577 | CCT | |
Cla05g02049 | Cla08g01577 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01248 | Cla-Chr2:26377103 | Cla08g01577 | Cla-Chr8:28452061 | 2.20E-44 | dispersed | |
Cla07g01286 | Cla-Chr7:29962990 | Cla08g01577 | Cla-Chr8:28452061 | 4.58E-23 | dispersed | |
Cla08g01577 | Cla-Chr8:28452061 | Cla09g00040 | Cla-Chr9:395291 | 2.03E-31 | dispersed | |
Cla01g01522 | Cla-Chr1:29721734 | Cla08g01577 | Cla-Chr8:28452061 | 3.08E-39 | transposed | |
Cla05g02049 | Cla-Chr5:32207526 | Cla08g01577 | Cla-Chr8:28452061 | 1.23E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61616 | PF00010 | HLH | 1.60E-06 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01577 | - | - | csv:105434749 | 273.478 |