Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01577 ATGGATATGGCGGACGCGGAGCATGCAAGTAAGTGGGGAAGAGAGGAGATGGATATTGTGAGTGTGATTGAGCAGATGGGAAAATTTGGAGAGAATTTAGAATATAATGAAGTGGCAGCTTCTTCTTCGGATTTTGCTTTTGGTAGTCCCAATATTGGTGTAACTGTAACTACTTCCACTTCACCTCCCATTTTTCCTTCTTTTAATAATCTCCCACCATCCACCGCCCTTTCAATCAGTAACGCCACTGCACCACCGCCTTTTCCACCCTATTCCGCCGCTGCCCGCTCCAGATACCATCTTCCCGCCACCCCAATTTCTGGCATGAAGGGAGAGGGGAAGGAATCAGAGTCAATGGGAGCGATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGTCGGAATGTTAAAATTTCAAAAGATCCTCAGAGTGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGCGAAAGAATTAGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACGGCCTCCATGTTAGACGAGGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTTCATTCACTCCAAATTGCCGCCGCCGCCGCCACCAACCACCCCCCCTCCGCCGCCGCCTACCCCTTTCCCACCGCCATCTTCTCTGCTGGGACTACTAATTATAATAAAAAACATCACTACCTGGAGGATGCTTCATTTTAA 756 48.02 MDMADAEHASKWGREEMDIVSVIEQMGKFGENLEYNEVAASSSDFAFGSPNIGVTVTTSTSPPIFPSFNNLPPSTALSISNATAPPPFPPYSAAARSRYHLPATPISGMKGEGKESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAAAATNHPPSAAAYPFPTAIFSAGTTNYNKKHHYLEDASF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28452061 28453168 - ClCG08G016020.1 Cla08g01577 279232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01577 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Cla08g01577 251 Coils Coil 198 218 - -
Cla08g01577 251 Gene3D - 149 211 IPR036638 GO:0046983
Cla08g01577 251 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 60 242 - -
Cla08g01577 251 Pfam Helix-loop-helix DNA-binding domain 162 201 IPR011598 GO:0046983
Cla08g01577 251 SMART finulus 158 207 IPR011598 GO:0046983
Cla08g01577 251 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 60 242 IPR045843 GO:0003700|GO:0006355
Cla08g01577 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 210 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g02049 Cla08g01577 CCT
Cla05g02049 Cla08g01577 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01248 Cla-Chr2:26377103 Cla08g01577 Cla-Chr8:28452061 2.20E-44 dispersed
Cla07g01286 Cla-Chr7:29962990 Cla08g01577 Cla-Chr8:28452061 4.58E-23 dispersed
Cla08g01577 Cla-Chr8:28452061 Cla09g00040 Cla-Chr9:395291 2.03E-31 dispersed
Cla01g01522 Cla-Chr1:29721734 Cla08g01577 Cla-Chr8:28452061 3.08E-39 transposed
Cla05g02049 Cla-Chr5:32207526 Cla08g01577 Cla-Chr8:28452061 1.23E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61616 PF00010 HLH 1.60E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01577 - - csv:105434749 273.478