Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01583 | ATGGCGGATCTCTACGGAACTTCCCCTTCTTCGGATGTTGTGGGTTTGCCTCATGACCCAGAAGATTTCTCTTCCTTCATCAATCACCATCTTCAAACTACCACTTCTTCTGCTTCTTCCCCTTCTTGCGTCTCCTTCAAGAACAAGTTTATGCCCTTGTTGCATTCTCAACCTCCTTGGCACTCTTCGTCGATGTTTTCTCGCCGGCCTGACTCCACCTCTGTTGCCGGAGTGTCCTCAATGCTCGATTTTCCCGAGGATCGGCTTCAGTCCAGTCGAGTTTTGAACCACGCTTTGTCGGATTGTAGTGTTAGGGATGTGAGATTTGCTGATGCTTCGTATTTGGCTGTCAATTCCACTTGCGGTGGCGTGAAATTGTCGGATCCTGGGGATTTCGTGAAAGAGAGTTCGGACAACGCGTTTTCTTCCTCCGGCGCTGTCGATTCCGATTCGAATGCGCCCTTGAAGAGAAGGGGTCTTTCGTCTGAAAATGATCTTGGGGATTTCAGTTGCGATAGCGAGGGTGGGGATGTGCCGGAAGTTCCATCCAGTACTGATCTGCCTCGAAATTCGTCGAAGAGAAGTAGAAGCGCTGAGGTCCATAATATGTCGGAGAAGAGACGAAGAAGGAGGATCAATGAGAAAATGAAAGCCCTTCAGAACCTAATTCCCAATTCAAACAAGACGGACAAAGCTTCAATGTTGGACGAAGCAATTGAGTATTTGAAGCAGCTTCAACTTCAAGTCCAGCTGAAAGATCTCTTTCTACTGCCATTTCCATTCTACTTGACGGGTGCAATCTTGGAAATGAGCAGGAATGCTGCCTATCTTGATCATTACTTTGTTAAAATTGTCCATGTTTTCATTGCTCATTTCAGGATCTACATGATATATAAGATGTTATCCATGAGAAATGGCTTGAGTTTGCAACCAATGTGCTTGCCTGGAATGCTGCAGCCAATGCAATTACCTCAGATGGGGTTGGACTTCGACGTCGGAAATGCTTTTCTAACATCCAGAAGAGGAATAGACACATCGTATACTAGGAACGAAGGGTGTCCCTTGCAATCTACATTCAATCTTTCGAACAAATGTAACCTTTCAGACCAGTCAATTGCCATCCCTTCTGTACCAAACACCACAACGTCGGAAACAGCATTCGGTTTTGAACCCGCAATTCAGACTTACAATGGGGAGTTTGACCTTTCCTCTGATTTCAAGGTAACAAAAGCAATAACATTAACCAACTCCTTTCTGGGTGGAATTGGTACCAAATATCTTTCTTGCAAATATGCAGGATGCCCAACTAGCCATGCAGTTGGATTGCGCTCGAACGGGGAAGGAGTCAGCAGGTGTGTCTTAGTTGCAGCCCCACTAGAGCGCAACAGTTCCAATAAATCTAAACCCTCTCTGAACCCCACTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGAATCGATCATTCTCGGAATCCAACTCATTCTGACTCTAAAGTTCAATTAGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCAACGCTGCTTCAGACGGAAGAAGGGAGCCCACCTAGTGGTCGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCGTACCCGGAGAGAGGTGGCGGTTCGTCTCACGGTAGCGGAGAGGCTAGGTCTGGTGACCAGGCGCCAATGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTTGAGTATGCTACTAATAGTTTTGCGGATGAGAATGTAATTGGTGAGGGCGGATATGGTATTGTGTACCGTGGCGTTATGGAGGACAACACTGTGGTTGCTATCAAAAATTTGCTCAATAACAGAGGACAGGCTGAGAAGGAGTTTAAAGTTGAAGTAGAAGCAATTGGACGCGTACGCCACAAGAATCTGGTGCGTTTGCTCGGCTACTGTGCTGAAGGAGCTCATAGGATACTTGTCTATGAGTACATTGATAACGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTCACATGGGACATTCGAATGAATATAATTGTTGGAACAGCAAAAGGGTTAACATACCTCCATGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTCGGGCTAGCAAAGCTTCTAGGCTCAGAGAGGAGTTATGTAACAACTCGGGTGATGGGAACTTTTGGATATGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTCGGTATCCTCATCATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTAAGTAATCGAAATGCAGAGGGAGTTCTGGATCCTAAGTTGCCTGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGTTAGTAGCTTTACGCTGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCTGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGTGGATATGAAAGTGGAGCAACCCAAGCAAGCCGACATCTACGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTGA | 2802 | 46.15 | MADLYGTSPSSDVVGLPHDPEDFSSFINHHLQTTTSSASSPSCVSFKNKFMPLLHSQPPWHSSSMFSRRPDSTSVAGVSSMLDFPEDRLQSSRVLNHALSDCSVRDVRFADASYLAVNSTCGGVKLSDPGDFVKESSDNAFSSSGAVDSDSNAPLKRRGLSSENDLGDFSCDSEGGDVPEVPSSTDLPRNSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQLKDLFLLPFPFYLTGAILEMSRNAAYLDHYFVKIVHVFIAHFRIYMIYKMLSMRNGLSLQPMCLPGMLQPMQLPQMGLDFDVGNAFLTSRRGIDTSYTRNEGCPLQSTFNLSNKCNLSDQSIAIPSVPNTTTSETAFGFEPAIQTYNGEFDLSSDFKVTKAITLTNSFLGGIGTKYLSCKYAGCPTSHAVGLRSNGEGVSRCVLVAAPLERNSSNKSKPSLNPTIPNVSKEIQEIRIDHSRNPTHSDSKVQLASNPEPLPEAEPLATLLQTEEGSPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPMAVPEVSHLGWGHWYTLRELEYATNSFADENVIGEGGYGIVYRGVMEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLRRKQELEEQQPREPHTLR | 933 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28504183 | 28513983 | - | ClCG08G016080.2 | Cla08g01583 | 279238 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01583 | 933 | MobiDBLite | consensus disorder prediction | 192 | 209 | - | - | |
Cla08g01583 | 933 | CDD | STKc_IRAK | 599 | 865 | - | - | |
Cla08g01583 | 933 | SMART | serkin_6 | 593 | 871 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla08g01583 | 933 | Pfam | Helix-loop-helix DNA-binding domain | 200 | 246 | IPR011598 | GO:0046983 | |
Cla08g01583 | 933 | Gene3D | Transferase(Phosphotransferase) domain 1 | 669 | 875 | - | - | |
Cla08g01583 | 933 | CDD | bHLH_AtPIF_like | 196 | 241 | - | - | |
Cla08g01583 | 933 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 193 | 252 | IPR036638 | GO:0046983 | |
Cla08g01583 | 933 | Coils | Coil | 202 | 222 | - | - | |
Cla08g01583 | 933 | MobiDBLite | consensus disorder prediction | 489 | 510 | - | - | |
Cla08g01583 | 933 | ProSiteProfiles | Protein kinase domain profile. | 593 | 851 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla08g01583 | 933 | Pfam | Protein kinase domain | 594 | 862 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla08g01583 | 933 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 196 | 245 | IPR011598 | GO:0046983 | |
Cla08g01583 | 933 | SUPERFAMILY | Protein kinase-like (PK-like) | 574 | 865 | IPR011009 | - | |
Cla08g01583 | 933 | MobiDBLite | consensus disorder prediction | 540 | 566 | - | - | |
Cla08g01583 | 933 | ProSitePatterns | Protein kinases ATP-binding region signature. | 599 | 621 | IPR017441 | GO:0005524 | |
Cla08g01583 | 933 | MobiDBLite | consensus disorder prediction | 911 | 933 | - | - | |
Cla08g01583 | 933 | MobiDBLite | consensus disorder prediction | 888 | 933 | - | - | |
Cla08g01583 | 933 | MobiDBLite | consensus disorder prediction | 137 | 158 | - | - | |
Cla08g01583 | 933 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 715 | 727 | IPR008271 | GO:0004672|GO:0006468 | |
Cla08g01583 | 933 | Gene3D | Phosphorylase Kinase; domain 1 | 568 | 668 | - | - | |
Cla08g01583 | 933 | MobiDBLite | consensus disorder prediction | 137 | 211 | - | - | |
Cla08g01583 | 933 | SMART | finulus | 202 | 251 | IPR011598 | GO:0046983 | |
Cla08g01583 | 933 | PANTHER | OS01G0323000 PROTEIN | 461 | 909 | - | - | |
Cla08g01583 | 933 | Gene3D | - | 191 | 253 | IPR036638 | GO:0046983 | |
Cla08g01583 | 933 | PANTHER | RECEPTOR-LIKE KINASE PLANT | 461 | 909 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00149 | Cla-Chr5:1397457 | Cla08g01583 | Cla-Chr8:28504183 | 9.56E-177 | dispersed | |
Cla05g00913 | Cla-Chr5:9057775 | Cla08g01583 | Cla-Chr8:28504183 | 5.98E-84 | dispersed | |
Cla08g01583 | Cla-Chr8:28504183 | Cla09g02192 | Cla-Chr9:39516751 | 1.39E-163 | dispersed | |
Cla11g01621 | Cla-Chr11:29885026 | Cla08g01583 | Cla-Chr8:28504183 | 5.61E-21 | dispersed | |
Cla01g01656 | Cla-Chr1:31412805 | Cla08g01583 | Cla-Chr8:28504183 | 3.13E-34 | transposed | |
Cla02g00525 | Cla-Chr2:5408472 | Cla08g01583 | Cla-Chr8:28504183 | 6.50E-171 | transposed | |
Cla01g01655 | Cla-Chr1:31407762 | Cla08g01583 | Cla-Chr8:28504183 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61618 | PF00069 | Pkinase | 8.90E-47 | CL0016 | Cla | TF | |
80764 | PF00069 | Pkinase | 8.90E-47 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01583 | - | - | pper:18793124 | 973.385 |