Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01583 ATGGCGGATCTCTACGGAACTTCCCCTTCTTCGGATGTTGTGGGTTTGCCTCATGACCCAGAAGATTTCTCTTCCTTCATCAATCACCATCTTCAAACTACCACTTCTTCTGCTTCTTCCCCTTCTTGCGTCTCCTTCAAGAACAAGTTTATGCCCTTGTTGCATTCTCAACCTCCTTGGCACTCTTCGTCGATGTTTTCTCGCCGGCCTGACTCCACCTCTGTTGCCGGAGTGTCCTCAATGCTCGATTTTCCCGAGGATCGGCTTCAGTCCAGTCGAGTTTTGAACCACGCTTTGTCGGATTGTAGTGTTAGGGATGTGAGATTTGCTGATGCTTCGTATTTGGCTGTCAATTCCACTTGCGGTGGCGTGAAATTGTCGGATCCTGGGGATTTCGTGAAAGAGAGTTCGGACAACGCGTTTTCTTCCTCCGGCGCTGTCGATTCCGATTCGAATGCGCCCTTGAAGAGAAGGGGTCTTTCGTCTGAAAATGATCTTGGGGATTTCAGTTGCGATAGCGAGGGTGGGGATGTGCCGGAAGTTCCATCCAGTACTGATCTGCCTCGAAATTCGTCGAAGAGAAGTAGAAGCGCTGAGGTCCATAATATGTCGGAGAAGAGACGAAGAAGGAGGATCAATGAGAAAATGAAAGCCCTTCAGAACCTAATTCCCAATTCAAACAAGACGGACAAAGCTTCAATGTTGGACGAAGCAATTGAGTATTTGAAGCAGCTTCAACTTCAAGTCCAGCTGAAAGATCTCTTTCTACTGCCATTTCCATTCTACTTGACGGGTGCAATCTTGGAAATGAGCAGGAATGCTGCCTATCTTGATCATTACTTTGTTAAAATTGTCCATGTTTTCATTGCTCATTTCAGGATCTACATGATATATAAGATGTTATCCATGAGAAATGGCTTGAGTTTGCAACCAATGTGCTTGCCTGGAATGCTGCAGCCAATGCAATTACCTCAGATGGGGTTGGACTTCGACGTCGGAAATGCTTTTCTAACATCCAGAAGAGGAATAGACACATCGTATACTAGGAACGAAGGGTGTCCCTTGCAATCTACATTCAATCTTTCGAACAAATGTAACCTTTCAGACCAGTCAATTGCCATCCCTTCTGTACCAAACACCACAACGTCGGAAACAGCATTCGGTTTTGAACCCGCAATTCAGACTTACAATGGGGAGTTTGACCTTTCCTCTGATTTCAAGGTAACAAAAGCAATAACATTAACCAACTCCTTTCTGGGTGGAATTGGTACCAAATATCTTTCTTGCAAATATGCAGGATGCCCAACTAGCCATGCAGTTGGATTGCGCTCGAACGGGGAAGGAGTCAGCAGGTGTGTCTTAGTTGCAGCCCCACTAGAGCGCAACAGTTCCAATAAATCTAAACCCTCTCTGAACCCCACTATCCCAAATGTGTCTAAGGAAATCCAGGAAATACGAATCGATCATTCTCGGAATCCAACTCATTCTGACTCTAAAGTTCAATTAGCTTCTAACCCTGAGCCTTTGCCGGAGGCAGAGCCTTTAGCAACGCTGCTTCAGACGGAAGAAGGGAGCCCACCTAGTGGTCGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCGTACCCGGAGAGAGGTGGCGGTTCGTCTCACGGTAGCGGAGAGGCTAGGTCTGGTGACCAGGCGCCAATGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTTGAGTATGCTACTAATAGTTTTGCGGATGAGAATGTAATTGGTGAGGGCGGATATGGTATTGTGTACCGTGGCGTTATGGAGGACAACACTGTGGTTGCTATCAAAAATTTGCTCAATAACAGAGGACAGGCTGAGAAGGAGTTTAAAGTTGAAGTAGAAGCAATTGGACGCGTACGCCACAAGAATCTGGTGCGTTTGCTCGGCTACTGTGCTGAAGGAGCTCATAGGATACTTGTCTATGAGTACATTGATAACGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGACCTTGTAGCCCTCTCACATGGGACATTCGAATGAATATAATTGTTGGAACAGCAAAAGGGTTAACATACCTCCATGAGGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTCGGGCTAGCAAAGCTTCTAGGCTCAGAGAGGAGTTATGTAACAACTCGGGTGATGGGAACTTTTGGATATGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTCGGTATCCTCATCATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTAAGTAATCGAAATGCAGAGGGAGTTCTGGATCCTAAGTTGCCTGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGTTAGTAGCTTTACGCTGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCTGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGAGAACCAGGACGATCACTACTGAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGTGGATATGAAAGTGGAGCAACCCAAGCAAGCCGACATCTACGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTGA 2802 46.15 MADLYGTSPSSDVVGLPHDPEDFSSFINHHLQTTTSSASSPSCVSFKNKFMPLLHSQPPWHSSSMFSRRPDSTSVAGVSSMLDFPEDRLQSSRVLNHALSDCSVRDVRFADASYLAVNSTCGGVKLSDPGDFVKESSDNAFSSSGAVDSDSNAPLKRRGLSSENDLGDFSCDSEGGDVPEVPSSTDLPRNSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQLKDLFLLPFPFYLTGAILEMSRNAAYLDHYFVKIVHVFIAHFRIYMIYKMLSMRNGLSLQPMCLPGMLQPMQLPQMGLDFDVGNAFLTSRRGIDTSYTRNEGCPLQSTFNLSNKCNLSDQSIAIPSVPNTTTSETAFGFEPAIQTYNGEFDLSSDFKVTKAITLTNSFLGGIGTKYLSCKYAGCPTSHAVGLRSNGEGVSRCVLVAAPLERNSSNKSKPSLNPTIPNVSKEIQEIRIDHSRNPTHSDSKVQLASNPEPLPEAEPLATLLQTEEGSPPSGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPMAVPEVSHLGWGHWYTLRELEYATNSFADENVIGEGGYGIVYRGVMEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLRRKQELEEQQPREPHTLR 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28504183 28513983 - ClCG08G016080.2 Cla08g01583 279238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01583 933 MobiDBLite consensus disorder prediction 192 209 - -
Cla08g01583 933 CDD STKc_IRAK 599 865 - -
Cla08g01583 933 SMART serkin_6 593 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01583 933 Pfam Helix-loop-helix DNA-binding domain 200 246 IPR011598 GO:0046983
Cla08g01583 933 Gene3D Transferase(Phosphotransferase) domain 1 669 875 - -
Cla08g01583 933 CDD bHLH_AtPIF_like 196 241 - -
Cla08g01583 933 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 252 IPR036638 GO:0046983
Cla08g01583 933 Coils Coil 202 222 - -
Cla08g01583 933 MobiDBLite consensus disorder prediction 489 510 - -
Cla08g01583 933 ProSiteProfiles Protein kinase domain profile. 593 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01583 933 Pfam Protein kinase domain 594 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01583 933 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Cla08g01583 933 SUPERFAMILY Protein kinase-like (PK-like) 574 865 IPR011009 -
Cla08g01583 933 MobiDBLite consensus disorder prediction 540 566 - -
Cla08g01583 933 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
Cla08g01583 933 MobiDBLite consensus disorder prediction 911 933 - -
Cla08g01583 933 MobiDBLite consensus disorder prediction 888 933 - -
Cla08g01583 933 MobiDBLite consensus disorder prediction 137 158 - -
Cla08g01583 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Cla08g01583 933 Gene3D Phosphorylase Kinase; domain 1 568 668 - -
Cla08g01583 933 MobiDBLite consensus disorder prediction 137 211 - -
Cla08g01583 933 SMART finulus 202 251 IPR011598 GO:0046983
Cla08g01583 933 PANTHER OS01G0323000 PROTEIN 461 909 - -
Cla08g01583 933 Gene3D - 191 253 IPR036638 GO:0046983
Cla08g01583 933 PANTHER RECEPTOR-LIKE KINASE PLANT 461 909 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00149 Cla-Chr5:1397457 Cla08g01583 Cla-Chr8:28504183 9.56E-177 dispersed
Cla05g00913 Cla-Chr5:9057775 Cla08g01583 Cla-Chr8:28504183 5.98E-84 dispersed
Cla08g01583 Cla-Chr8:28504183 Cla09g02192 Cla-Chr9:39516751 1.39E-163 dispersed
Cla11g01621 Cla-Chr11:29885026 Cla08g01583 Cla-Chr8:28504183 5.61E-21 dispersed
Cla01g01656 Cla-Chr1:31412805 Cla08g01583 Cla-Chr8:28504183 3.13E-34 transposed
Cla02g00525 Cla-Chr2:5408472 Cla08g01583 Cla-Chr8:28504183 6.50E-171 transposed
Cla01g01655 Cla-Chr1:31407762 Cla08g01583 Cla-Chr8:28504183 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61618 PF00069 Pkinase 8.90E-47 CL0016 Cla TF
80764 PF00069 Pkinase 8.90E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01583 - - pper:18793124 973.385