Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01585 ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA 693 47.19 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28538973 28539873 - ClCG08G016110.1 Cla08g01585 279240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01585 230 CDD homeodomain 96 157 IPR001356 GO:0003677
Cla08g01585 230 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677
Cla08g01585 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 230 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cla08g01585 230 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Cla08g01585 230 MobiDBLite consensus disorder prediction 153 183 - -
Cla08g01585 230 Pfam Homeodomain 96 155 IPR001356 GO:0003677
Cla08g01585 230 Gene3D - 95 162 - -
Cla08g01585 230 SMART HOX_1 93 160 IPR001356 GO:0003677
Cla08g01585 230 MobiDBLite consensus disorder prediction 64 102 - -
Cla08g01585 230 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01585 Cla-Chr8:28538973 Cla11g00606 Cla-Chr11:6883719 1.54E-24 dispersed
Cla08g01585 Cla-Chr8:28538973 Cla06g01422 Cla-Chr6:27792731 8.70E-29 transposed
Cla08g01585 Cla-Chr8:28538973 Cla04g01050 Cla-Chr4:25683936 1.73E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61619 PF00046 Homeodomain 9.80E-19 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01585 - - csv:101204222 391.734