Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01585 ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA 693 47.19 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28538973 28539873 - ClCG08G016110.1 Cla08g01585 279240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01585 230 CDD homeodomain 96 157 IPR001356 GO:0003677
Cla08g01585 230 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677
Cla08g01585 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 230 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cla08g01585 230 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Cla08g01585 230 MobiDBLite consensus disorder prediction 153 183 - -
Cla08g01585 230 Pfam Homeodomain 96 155 IPR001356 GO:0003677
Cla08g01585 230 Gene3D - 95 162 - -
Cla08g01585 230 SMART HOX_1 93 160 IPR001356 GO:0003677
Cla08g01585 230 MobiDBLite consensus disorder prediction 64 102 - -
Cla08g01585 230 MobiDBLite consensus disorder prediction 75 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01585 - - - csv:101204222 391.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01585 Cla-Chr8:28538973 Cla11g00606 Cla-Chr11:6883719 1.54E-24 dispersed
Cla08g01585 Cla-Chr8:28538973 Cla06g01422 Cla-Chr6:27792731 8.70E-29 transposed
Cla08g01585 Cla-Chr8:28538973 Cla04g01050 Cla-Chr4:25683936 1.73E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla04g01050 CCT,ECH 1 195 Wox Gene Family AT3G18010 57.2 3.1e-48 189.5
Cla06g01422 CCT,ECH 1 176 Wox Gene Family AT3G18010 53.6 6.4e-41 165.2
Cla11g01830 . 1 271 Wox Gene Family AT4G35550 50.9 2.2e-57 219.5
Cla08g01585 . 5 162 Wox Gene Family AT1G46480 65.1 2.6e-52 202.2
Cla04g01050 CCT,ECH 1 195 Wox Gene Family AT3G18010 57.2 3.1e-48 189.5
Cla06g01422 CCT,ECH 1 176 Wox Gene Family AT3G18010 53.6 6.4e-41 165.2
Cla08g01585 . 5 162 Wox Gene Family AT1G46480 65.1 2.6e-52 202.2
Cla11g01830 . 1 271 Wox Gene Family AT4G35550 50.9 2.2e-57 219.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61619 PF00046 Homeodomain 9.80E-19 CL0123 Cla TF