Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01585 | ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA | 693 | 47.19 | MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28538973 | 28539873 | - | ClCG08G016110.1 | Cla08g01585 | 279240 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01585 | 230 | CDD | homeodomain | 96 | 157 | IPR001356 | GO:0003677 | |
Cla08g01585 | 230 | ProSiteProfiles | 'Homeobox' domain profile. | 91 | 156 | IPR001356 | GO:0003677 | |
Cla08g01585 | 230 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 5 | 230 | IPR044186 | GO:0003700|GO:0010067|GO:0010087|GO:0051301 | |
Cla08g01585 | 230 | SUPERFAMILY | Homeodomain-like | 92 | 162 | IPR009057 | - | |
Cla08g01585 | 230 | MobiDBLite | consensus disorder prediction | 153 | 183 | - | - | |
Cla08g01585 | 230 | Pfam | Homeodomain | 96 | 155 | IPR001356 | GO:0003677 | |
Cla08g01585 | 230 | Gene3D | - | 95 | 162 | - | - | |
Cla08g01585 | 230 | SMART | HOX_1 | 93 | 160 | IPR001356 | GO:0003677 | |
Cla08g01585 | 230 | MobiDBLite | consensus disorder prediction | 64 | 102 | - | - | |
Cla08g01585 | 230 | MobiDBLite | consensus disorder prediction | 75 | 102 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g01585 | Cla-Chr8:28538973 | Cla11g00606 | Cla-Chr11:6883719 | 1.54E-24 | dispersed | |
Cla08g01585 | Cla-Chr8:28538973 | Cla06g01422 | Cla-Chr6:27792731 | 8.70E-29 | transposed | |
Cla08g01585 | Cla-Chr8:28538973 | Cla04g01050 | Cla-Chr4:25683936 | 1.73E-28 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61619 | PF00046 | Homeodomain | 9.80E-19 | CL0123 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01585 | - | - | csv:101204222 | 391.734 |