Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01590 ATGGTACCACCATATGAGCTTGATTCTCTTTATTGCTCAGAGGACCACTGGGAGGACGACGACGACCAAGAAGAAAGGGGTTTTCATGAGCAACCTTACTCTAATTTAACAACCGAATCGAGTTCTCCGATTCTGGCAGTGGCAGAGCAGGATCTGTTTTGGGAAAACGATGAACTAAGTTCTCTGTTCTCAAGAGAGAAGCCTAATGAACTGTTTAAAACCATTCAGATTGACCCTTCTCTTGCCGTCGCTCGACGAAGCGCCGTCGAGTGGATGCTGAAGGTTAACGCCCATTACTCTTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTACTTGGATCGGTTTCTGTCCTGTTTTCATTTTCAAAGAGACAAGCCATGGATGTCTCAGCTTGCTGCGGTTGCTTGTATCTCTCTTGCGGCCAAAGTAGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGACAGTAGATATCTGTTTGAAGCTAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATTATATCTCAAGGAGGCTTGGATTCAAGGACCATATCTGCTGGGAAATTCTTTGGCAGTGTGAGCGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCCCACCTCAGCGTTGAATACGATTCCCAGCTTCTTAACATCCTCGGAATCGACAAGGGGAATGTGGAGGAATGCTGTAAACTGATCTCAAATACATCTAGAAGAAACGGCAACCAATTCATGAAACGTAAATTTGGGTCGATTCCGGGCAGCCCGAACGGCGTGATGGACGTGTCATTCAGCTACGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCACCAGAGCCTTTAACGAAGAAGAACAGAGCATATGGATCGGTGTCTGGGGATGGCGAAGCATTTAGAACCCTCTCTTAA 1059 46.27 MVPPYELDSLYCSEDHWEDDDDQEERGFHEQPYSNLTTESSSPILAVAEQDLFWENDELSSLFSREKPNELFKTIQIDPSLAVARRSAVEWMLKVNAHYSFSALTAVLAVDYLDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYISRRLGFKDHICWEILWQCERTILSVILESDFMSFLPSVMATATMLHVFKAMEEPHLSVEYDSQLLNILGIDKGNVEECCKLISNTSRRNGNQFMKRKFGSIPGSPNGVMDVSFSYDSSNDSWSVASSVSSSPEPLTKKNRAYGSVSGDGEAFRTLS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28591192 28593122 + ClCG08G016160.1 Cla08g01590 279245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01590 352 PANTHER CYCLINS 33 336 IPR039361 -
Cla08g01590 352 CDD CYCLIN 85 177 IPR013763 -
Cla08g01590 352 PANTHER CYCLIN D3.1 PROTEIN 33 336 - -
Cla08g01590 352 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Cla08g01590 352 MobiDBLite consensus disorder prediction 20 39 - -
Cla08g01590 352 SUPERFAMILY Cyclin-like 169 283 IPR036915 -
Cla08g01590 352 SUPERFAMILY Cyclin-like 54 185 IPR036915 -
Cla08g01590 352 MobiDBLite consensus disorder prediction 322 352 - -
Cla08g01590 352 Pfam Cyclin, N-terminal domain 81 185 IPR006671 -
Cla08g01590 352 Gene3D - 186 276 - -
Cla08g01590 352 Pfam Cyclin, C-terminal domain 187 295 IPR004367 -
Cla08g01590 352 SMART cyclin_7 90 178 IPR013763 -
Cla08g01590 352 Gene3D - 70 185 - -
Cla08g01590 352 SMART Cyclin_C_2 187 313 IPR004367 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g02076 Cla08g01590 CCT
Cla05g02076 Cla08g01590 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01805 Cla-Chr1:32976927 Cla08g01590 Cla-Chr8:28591192 3.43E-59 dispersed
Cla05g01093 Cla-Chr5:11320100 Cla08g01590 Cla-Chr8:28591192 1.77E-99 dispersed
Cla08g01590 Cla-Chr8:28591192 Cla10g00969 Cla-Chr10:22769980 3.13E-37 dispersed
Cla01g01670 Cla-Chr1:31597532 Cla08g01590 Cla-Chr8:28591192 2.18E-84 wgd
Cla02g00627 Cla-Chr2:6991298 Cla08g01590 Cla-Chr8:28591192 1.24E-88 wgd
Cla05g02076 Cla-Chr5:32411834 Cla08g01590 Cla-Chr8:28591192 2.03E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01590 K14505 - csv:101205442 584.334