Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g01593 | ATGTCCAACCCCAGCTACTTAAGTACACTTTGTAAGGTTGCATTAGGATTGGTAGGATTCTTTCTCCATTGTCCAATTAAAGAGCCACCTCTAGCACAAAGAACTAAACCCACAACATCTGCCTTTAACCCAACTTTGGCTCTTAGCAAAGGCTCTCGTGCTACCTCCTATTGGCGCATAGAGTTCAATCGTAGAATGGATGGATTAGTAGAAGGAACCCCTAAAAGGGAAGGGCCAAATAGCATCATACATTGCAAGATTAATAGTCCTAACAAAACCATTTTGACCCTCTGTGTTTGTGCAATATTATTTAGTTTTCATATCGTTTTTTTTTTCCAAGAATGTGTTAATGTCTATATTTTTACAGCTGATCGGTTTAATATAACTTATAATACACAAAGGGTCGAAATGGCTTTATTAAAACTATCAATCTTGCTATGTATAATGTTATTTGGCCCTTCCCTTTCAGGGGCTACTTCTCCTAAGAACATATTCATCCTCGCTGGCCAAAGCAATATGGCTGGTCGAGGTGGGGTTGAGAAAAATCTAAAGGGAGAGCTTGAGTGGGATGGATTGATCCCACTAGAATGTCAATCTGACTCATCCATCCTACGATTAAACCCTGAGCGCCAATGGGAGATAGCACGAGAGCCTCTCCATGAGGGGATCGACATTAACAAGACAGTTGGGATTGGCCCGGGAATGTCATTTGCTCACCAGCTACTAGCTAAAGCAGGGCCAAATATAGGTGTTGTCGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAATGCAACTTTTTACCAAAACTTCATTGAACGAATCAAAGCATCGGATAAAGATGGTGGAGTTGTGCGTGCTCTTTTTTGGTTCCAAGGCGAAAGCGATGCAGCTATGAATGACACTGCTATGAGATACAAAGACAACCTAAAGAATTTCTTCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCCATCATTGTTGTTAAAATAGCCCTTTATGACTTTTTTATGAAGCACGATACTCATAATCTGCCAGCAGTGAGGGCGGCAGAAGATGCAGTCAGCAAGGAGCTACCACATGTGGTGACCATTGACGCTTTGAAATTACCTTTAAACTTTGAGACACATGAAGGCTTCAACAAAGATCATGGCCATTTTAATACCACAATGGAAATTATTGTGGGGGCTACTTCTCCTAAGAACATATTCATCCTTGCTGGTCAGAGCAATATGGCTGGGCGAGGTGGGGTTGAGAAAAATCTTAAGGGAGAGCTTGAGTGGGATGGATTGATCCCACCAGAATGTCAATCTGACTCATCCATCCTACAATTAAATTCTGAGCGCCAATGGGAGATAGCACGAGAGCCTCTCCATGAGGGGATCGACATCAACAAGACAGTTGGGATTGGTCCGGGAATGTCATTTGCTCACCAGCTACTAGCTAAAGTCGGGCCAAATGCAGGTGTTGTTGGTTTAGTTCCTTGTGCTAGAGGTGGCATTTTAATTGAACAATGGATTAAAAATCAAGGTGGAGTTGTGCGTGCTCTTTTTTGGTTCCAAGGCGAAAGCGATGCAGCTATGAATGACACTGCTATGAGATACAAAGACAACCTAAAGAATTTCTTCACCGACATCCGCAATGATATAAAACCTAGATTCTTACCCATCATTGTTGTTAAAATAACCCTCTGTGACTTTTTGATGAAGCACGATACTCATAATCTGCCAGCAGTGAGGGCGGCAGAAGATGCAGTTAGCAAGGAGCTACCACACGTGGTGACTATTGACGCTTTGAAATTACCTTTAAACTTTGAAACACATGAAGGCTTCAACAAAGATCATGGTCATTTTAATACCACGATAGAAATTATTGTGGGTAAATGGTTGGGTGATACCTACCTCTCCCACCATGTAAAATATTATTTTTTAAAAACATATTTAGGTGCTGGTTTGCTGTCCAAAGTTGTAGGGGTTGAAATGCCTTTATTAAAACTATCAATCTTGCTATGTACAATGTTGTTTGGCCCTTCCCTTTCAGGGGCTACTTCTCCTAAGAACATATTTATCCTCGCTGGCCAAAGCAATATGGCTGGTCGAGGTGGGGTTGAGAAAAATCTAAAGGGAGAGCTTGAGTGGGATGGATTGATCCCACCAGAATGTCAATCTGACTCATCCATCCTACGATTAAATTCTGAGCGCCAATGGGAGATAGCACGAGAGCCTCTTCATGAGGGGATCGACATCAACAAGACAGTTGGAATTGGTCCAGGAATGTCATTTGCTCACCAGCTACTAGCTAAAGTTGGGCCAAATGCAGGTGTTGTCGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAATGCAACTTTTTACCAAAACTTCATTGAACGAATCAAAGCATCAGATAGAGAAGGTGGAGTTGTGCGTGCTCTTTTTTGGTTCCAAGGCGAAAGCGATGCAGCTATGAATGACACTGCTATGAGATACAAAGACAACCTAAAGAATTTCTTCACCAACATCCGCAATGATATAAAACCTAGATTTTTACCCATCATTGTTGTTAAAATAGCCCTCTATGACTTTTTTATGAAACACGATACTCATAATCTGCCAGCAGTTAGGGCGGCAGAAGATGCAGTCAGCAAGGAGCTACCACATGTGGTGACCATTGACGCTTTGAAATTACCTTTAAACTTTGAGACACATGAAGGCTTCAACAAAGATCATGGCCATTTTAATACCACAATGGAAATTATTGTGGGGGCTACTTCTCCTAAGAACATATTCATCCTTGCTGGTCAGAGCAATATGGCTGGTCGAGGTGGGGTTGAGAAAAATCTAAAGGGAGACCTTGAGTGGGATGGATTGATCCCATCAGAATGTCAATCTGACTCATCCATCCTACGATTAAATCCTGAGCGCCAATGGGAGATAGCACGAGAGCCTCTCCATGAGGGGATCGACATCAACAAGACAGTTGGGATTGGTCCGGGAATGTCATTTGCTCACCAGCTACTAGCTAAAGTTGGGCCAAATGCAGGTGTTGTCGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAATGCAACTTTTTACCAAAACTTCATTGAACGAATCAAAGCATCAGATAGAGAAGGTGGAGTTGTGCGTGCTCTTTTTTGGTTCCAAGGCGAAAGCGATGCAGCTATGAATGACACTGCTATGAGATACAAAGACAACCTAAAGAATTTCTTCACCAACATCCGCAATGATATAAAACCTAGATTTTTACCCATCATTGTTGTTAAAATAGCCCTCTATGACTTTTTTATGAAACACGATACTCATAATCTGCCAGCAGTTAGGGCGGCAGAAGATGCAGTCAGCAAGGAGCTACCACATGTGGTGACCATTGACGCTTTGAAATTACCTTTAAACTTTGAGACACATGAAGGCTTCAACAAAGATCATGGCCATTTTAATACCACAATGGAAATTATTGTGGGTAAATGGTTGGCTGATACCTACCTCTCCCACTATGGTCATTTACTCTAA | 3642 | 41.65 | MSNPSYLSTLCKVALGLVGFFLHCPIKEPPLAQRTKPTTSAFNPTLALSKGSRATSYWRIEFNRRMDGLVEGTPKREGPNSIIHCKINSPNKTILTLCVCAILFSFHIVFFFQECVNVYIFTADRFNITYNTQRVEMALLKLSILLCIMLFGPSLSGATSPKNIFILAGQSNMAGRGGVEKNLKGELEWDGLIPLECQSDSSILRLNPERQWEIAREPLHEGIDINKTVGIGPGMSFAHQLLAKAGPNIGVVGLVPCARGGTLIEQWIKNPSNPNATFYQNFIERIKASDKDGGVVRALFWFQGESDAAMNDTAMRYKDNLKNFFTDIRNDIKPRFLPIIVVKIALYDFFMKHDTHNLPAVRAAEDAVSKELPHVVTIDALKLPLNFETHEGFNKDHGHFNTTMEIIVGATSPKNIFILAGQSNMAGRGGVEKNLKGELEWDGLIPPECQSDSSILQLNSERQWEIAREPLHEGIDINKTVGIGPGMSFAHQLLAKVGPNAGVVGLVPCARGGILIEQWIKNQGGVVRALFWFQGESDAAMNDTAMRYKDNLKNFFTDIRNDIKPRFLPIIVVKITLCDFLMKHDTHNLPAVRAAEDAVSKELPHVVTIDALKLPLNFETHEGFNKDHGHFNTTIEIIVGKWLGDTYLSHHVKYYFLKTYLGAGLLSKVVGVEMPLLKLSILLCTMLFGPSLSGATSPKNIFILAGQSNMAGRGGVEKNLKGELEWDGLIPPECQSDSSILRLNSERQWEIAREPLHEGIDINKTVGIGPGMSFAHQLLAKVGPNAGVVGLVPCARGGTLIEQWIKNPSNPNATFYQNFIERIKASDREGGVVRALFWFQGESDAAMNDTAMRYKDNLKNFFTNIRNDIKPRFLPIIVVKIALYDFFMKHDTHNLPAVRAAEDAVSKELPHVVTIDALKLPLNFETHEGFNKDHGHFNTTMEIIVGATSPKNIFILAGQSNMAGRGGVEKNLKGDLEWDGLIPSECQSDSSILRLNPERQWEIAREPLHEGIDINKTVGIGPGMSFAHQLLAKVGPNAGVVGLVPCARGGTLIEQWIKNPSNPNATFYQNFIERIKASDREGGVVRALFWFQGESDAAMNDTAMRYKDNLKNFFTNIRNDIKPRFLPIIVVKIALYDFFMKHDTHNLPAVRAAEDAVSKELPHVVTIDALKLPLNFETHEGFNKDHGHFNTTMEIIVGKWLADTYLSHYGHLL | 1213 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 28602676 | 28619804 | + | ClCG08G016200.2 | Cla08g01593 | 279248 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g01593 | 1213 | Gene3D | SGNH hydrolase | 414 | 651 | IPR036514 | - | |
| Cla08g01593 | 1213 | Gene3D | SGNH hydrolase | 697 | 949 | IPR036514 | - | |
| Cla08g01593 | 1213 | Gene3D | SGNH hydrolase | 160 | 413 | IPR036514 | - | |
| Cla08g01593 | 1213 | Gene3D | SGNH hydrolase | 950 | 1210 | IPR036514 | - | |
| Cla08g01593 | 1213 | SUPERFAMILY | SGNH hydrolase | 700 | 946 | - | - | |
| Cla08g01593 | 1213 | PANTHER | ESTERASE, PUTATIVE (DUF303)-RELATED | 696 | 947 | - | - | |
| Cla08g01593 | 1213 | PANTHER | ESTERASE, PUTATIVE (DUF303)-RELATED | 159 | 410 | - | - | |
| Cla08g01593 | 1213 | SUPERFAMILY | SGNH hydrolase | 163 | 409 | - | - | |
| Cla08g01593 | 1213 | PANTHER | ESTERASE, PUTATIVE (DUF303)-RELATED | 948 | 1209 | - | - | |
| Cla08g01593 | 1213 | SUPERFAMILY | SGNH hydrolase | 952 | 1210 | - | - | |
| Cla08g01593 | 1213 | SUPERFAMILY | SGNH hydrolase | 415 | 653 | - | - | |
| Cla08g01593 | 1213 | PANTHER | BNACNNG62850D PROTEIN | 159 | 410 | - | - | |
| Cla08g01593 | 1213 | PANTHER | ESTERASE, PUTATIVE (DUF303)-RELATED | 411 | 651 | - | - | |
| Cla08g01593 | 1213 | Pfam | Carbohydrate esterase, sialic acid-specific acetylesterase | 162 | 410 | IPR005181 | - | |
| Cla08g01593 | 1213 | Pfam | Carbohydrate esterase, sialic acid-specific acetylesterase | 699 | 947 | IPR005181 | - | |
| Cla08g01593 | 1213 | Pfam | Carbohydrate esterase, sialic acid-specific acetylesterase | 414 | 648 | IPR005181 | - | |
| Cla08g01593 | 1213 | Pfam | Carbohydrate esterase, sialic acid-specific acetylesterase | 951 | 1206 | IPR005181 | - | |
| Cla08g01593 | 1213 | PANTHER | BNACNNG62850D PROTEIN | 696 | 947 | - | - | |
| Cla08g01593 | 1213 | PANTHER | BNACNNG62850D PROTEIN | 411 | 651 | - | - | |
| Cla08g01593 | 1213 | PANTHER | BNACNNG62850D PROTEIN | 948 | 1209 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g01593 | - | - | - | csv:116402003 | 467.233 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g00169 | Cla-Chr7:1937312 | Cla08g01593 | Cla-Chr8:28602676 | 5.44E-103 | dispersed | |
| Cla08g00703 | Cla-Chr8:19283156 | Cla08g01593 | Cla-Chr8:28602676 | 5.32E-63 | dispersed | |
| Cla08g01593 | Cla-Chr8:28602676 | Cla10g01240 | Cla-Chr10:27171436 | 2.88E-131 | dispersed | |
| Cla08g01592 | Cla-Chr8:28601637 | Cla08g01593 | Cla-Chr8:28602676 | 1.11E-126 | tandem | |
| Cla08g01593 | Cla-Chr8:28602676 | Cla08g01594 | Cla-Chr8:28605462 | 1.47E-60 | tandem |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g715 | . | Blo12g00972 | . | Bda03g00197 | . | Bpe04g00169 | Bma04g00150 | . | . | Cmo12g00515 | . | . | . | . | . | . | Cpe07g00500 | Bhi04g00386 | . | . | . | Hepe03g0729 | . | Lcy13g2109 | Cla08g01593 | Cam08g2093 | Cec08g1674 | Cco08g1805 | Clacu08g1778 | . | Cre08g1561 | . | . | . | Cone20ag0211 | . | Csa04g02447 | . | Cme03g02074 | . | . | . | . | . | Bpe05g00378 | . | . | . | . | . | Cma12g00572 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi08g01499 | Csa02g01923 | Chy07g00162 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000128 | 0 | 5 | 0 | 0 | 0 | 8 | 1 | 8 | 7 | 3 | 6 | 7 | 11 | 6 | 8 | 12 | 7 | 1 | 11 | 7 | 5 | 24 | 17 | 10 | 14 | 13 | 7 | 4 | 12 | 0 | 214 |