Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g01600 | ATGGCCGCGGCAGATAACTGTGTCCGTGTCACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGCCAATCCGCCAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAACATTCAGAATGTTAATGGGTCAATGGCCCCACAGAAGAGGAAGGCCAAGTCCCAGATGACTAAATGCAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCAACGATGAAGACGACGGTTGTTTCTGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCATCGGATATTTATGCTTATCTTCGCAAAATGGAGGTAAAACCCCTCTCTGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTAGCAGAGGAATACAAGCTTGGCTCCGATACTCTGTATCTATCCATCTCTTACCTCGATAGGTTTTTATCAATGAACATCCTCAGTAGGCAAAGGCTCCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAGGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAAGCTGATATACTTAAGTCTCTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGCAATCCATCTACTATTATGCGAATCCCATCATGGTGGATTTTATATTAACTTCTTGTTCTGGCTTCTTTCTCATGATTACAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAATTTTCTATTTACTAATCCTCCTGCTTTATGCTTGAAACAGATACCAAATCTGCAGTTGGAGTTTCTTGGTTATTACCTTGCTGAGCTTAGCTTATTGGACTACAATTTTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCCTCTGTTGTATTTCTTGCAAAATTTATTATCCGACCAAAGCTGCATCCTTGGGTAAAAGCTCTGATTCAATCCCTTGTTTATGTAGCTATGAACTTGAAGGGTCCAAACATGCAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTGATTCTGTTACATGATCTGTATATGGCCAGAAGAGGGGGGTCTCTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTTGCAATGATGCCTTCACCTCCCGAGATACCGTTTTCATATTTTGAAGAAGCTTAG | 1308 | 42.66 | MAAADNCVRVTRASKKRAAAAAVVEGQSANKKRVVLGELSNIQNVNGSMAPQKRKAKSQMTKCKPKKRAKVGVAPTMKTTVVSEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEVKPLSAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRQSIYYYANPIMVDFILTSCSGFFLMITGGSLILLKKISNFLFTNPPALCLKQIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWVKALIQSLVYVAMNLKGPNMQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA | 435 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 28660635 | 28662737 | - | ClCG08G016260.1 | Cla08g01600 | 279255 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g01600 | 435 | SUPERFAMILY | Cyclin-like | 306 | 426 | IPR036915 | - | |
| Cla08g01600 | 435 | CDD | CYCLIN | 299 | 392 | IPR013763 | - | |
| Cla08g01600 | 435 | Gene3D | - | 130 | 236 | - | - | |
| Cla08g01600 | 435 | Pfam | Cyclin, N-terminal domain | 111 | 241 | IPR006671 | - | |
| Cla08g01600 | 435 | PANTHER | CYCLIN-A3-1-RELATED | 24 | 252 | - | - | |
| Cla08g01600 | 435 | PANTHER | CYCLIN-A3-1-RELATED | 305 | 434 | - | - | |
| Cla08g01600 | 435 | Pfam | Cyclin, C-terminal domain | 306 | 424 | IPR004367 | - | |
| Cla08g01600 | 435 | CDD | CYCLIN | 145 | 234 | IPR013763 | - | |
| Cla08g01600 | 435 | SMART | Cyclin_C_2 | 244 | 424 | IPR004367 | - | |
| Cla08g01600 | 435 | Gene3D | - | 237 | 428 | - | - | |
| Cla08g01600 | 435 | PANTHER | CYCLINS | 24 | 252 | IPR039361 | - | |
| Cla08g01600 | 435 | PANTHER | CYCLINS | 305 | 434 | IPR039361 | - | |
| Cla08g01600 | 435 | SUPERFAMILY | Cyclin-like | 97 | 241 | IPR036915 | - | |
| Cla08g01600 | 435 | ProSitePatterns | Cyclins signature. | 146 | 177 | IPR006671 | - | |
| Cla08g01600 | 435 | PIRSF | Cyclin_A_B_D_E | 290 | 428 | IPR039361 | - | |
| Cla08g01600 | 435 | PIRSF | Cyclin_A_B_D_E | 1 | 259 | IPR039361 | - | |
| Cla08g01600 | 435 | SMART | cyclin_7 | 290 | 393 | IPR013763 | - | |
| Cla08g01600 | 435 | SMART | cyclin_7 | 151 | 235 | IPR013763 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla05g02086 | Cla08g01600 | CCT | |
| Cla05g02086 | Cla08g01600 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla08g01290 | Cla-Chr8:25779251 | Cla08g01600 | Cla-Chr8:28660635 | 3.16E-69 | dispersed | |
| Cla08g01600 | Cla-Chr8:28660635 | Cla09g00216 | Cla-Chr9:2169330 | 1.81E-76 | dispersed | |
| Cla02g00659 | Cla-Chr2:7554924 | Cla08g01600 | Cla-Chr8:28660635 | 9.72E-87 | wgd | |
| Cla05g02086 | Cla-Chr5:32502845 | Cla08g01600 | Cla-Chr8:28660635 | 9.29E-146 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g01600 | K06627 | - | csv:101206145 | 640.573 |