Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01612 ATGTCCAGGTCCCGAGTTTACGCCGACGTCAATGTTCACCGCCCTAGGGATTACTGGGACTACGAATCTCTTGCTGTCCAATGGAGGGTTCGATTTACTTGTTGGGATCTCTTCATTTTAGCTTATTGTCTATTTTTCTTTGTCCAATGTCCTACGGATCGTTGTCTGGGGCTCGACCTTTATATCTTTGATATTGTTTTGGACCAGGATGGAGGTTTGCTGTGTGTATTGGAAGTTGGATTCTTGAATGTTGCTGGATTTGTTCTTTTTACATTACTCGGGGAGGAGCCCGCTGTGTATATCGGCCCTGGGCATTCCTTCCACTTTGGCATTTGTCTGGTCAAGATGATTATGAGGTCGTCCGGAAAGTTGGAAGAGGAAAGTACAGTGAGATCACAGTCAATTCTGCATTTTTCATATGTGCCATACATGAATGGCATTTACTCATATTTTAAAATAAAGAGGGAGATAAAGATATTACAGAATCTCTGTGGCGGTCCAAATATTGTGAAACTGCTAGATATAGTCAGAGATCAGCACTCAAAAACTCCTAGCTTAATCTTTGAATATGTGAACAGTACAGATTTTAAAATTTTGTACCCTACGCTGACTGATTATGACATACGCTACTATATATACGAACTTTTGAAGGTTGTTAATTTATGTGGTGTTTACTGCCTTCATCTTGCTTCTGATCTGGGCATTCTATACCTGCAGGCATTGGATTACTGCCATTCACAGGGCATAATGCATAGAGATGTAAAGCCTCACAATGTTATGATTGACCATGAACTGCGAAAACTTCGTTTGATTGATTGGGGTCTTGCTGAGTTCTACCATCCCGGGAAGGAATACAATGTCCGAGTGGCATCTAGGTATTTCAAAGGGCCCGAACTTCTTGTAGATTTACAAGACTATGACTATTCCTTGGATATGTGGAGCCTGGGTTGCATGTTTGCTGGAATGCTTGCTCAAGGCCAGTTTCTTTTCTTGCAGATTTTCCGAAAGGAACCCTTCTTCTATGGTCATGACAATCATGACCAGCTTGTCAAAATTGCTAAGGTGTTGGGGACAGATGAGTTGAATGCATATCTGAATAAATATCAACTGGTTCTTGATCCACAACTTGAAGCACTTGTTGGAAGGCATAGCCGTAAGCCATGGTCAAGATTTATCAATGCCGATAATCAGCATCTTGTATCCCCTGAGGCCATTGATTTTTTGGATAAGCTTCTTCGATATGACCATCAAGATAGGCTCACTGCAAGAGAAGCAATGGCTCATCCATACTTCTTCCAGGTGAGAACTGCTGAGAACAGCCGGCTACGAACCCAATAA 1338 41.93 MSRSRVYADVNVHRPRDYWDYESLAVQWRVRFTCWDLFILAYCLFFFVQCPTDRCLGLDLYIFDIVLDQDGGLLCVLEVGFLNVAGFVLFTLLGEEPAVYIGPGHSFHFGICLVKMIMRSSGKLEEESTVRSQSILHFSYVPYMNGIYSYFKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKILYPTLTDYDIRYYIYELLKVVNLCGVYCLHLASDLGILYLQALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMLAQGQFLFLQIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYQLVLDPQLEALVGRHSRKPWSRFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFFQVRTAENSRLRTQ 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28736555 28741252 - ClCG08G016370.2 Cla08g01612 279267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01612 445 PANTHER CASEIN KINASE II SUBUNIT ALPHA 237 445 IPR045216 GO:0004674|GO:0006468
Cla08g01612 445 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 29 IPR045216 GO:0004674|GO:0006468
Cla08g01612 445 Pfam Protein kinase domain 153 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01612 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Cla08g01612 445 Gene3D Phosphorylase Kinase; domain 1 152 190 - -
Cla08g01612 445 Gene3D Transferase(Phosphotransferase) domain 1 191 222 - -
Cla08g01612 445 Gene3D Transferase(Phosphotransferase) domain 1 238 431 - -
Cla08g01612 445 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 152 223 - -
Cla08g01612 445 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 237 445 - -
Cla08g01612 445 ProSiteProfiles Protein kinase domain profile. 87 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01612 445 CDD STKc_CK2_alpha 151 431 IPR045216 GO:0004674|GO:0006468
Cla08g01612 445 SUPERFAMILY Protein kinase-like (PK-like) 148 435 IPR011009 -
Cla08g01612 445 SMART serkin_6 87 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01612 445 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 29 - -
Cla08g01612 445 PANTHER CASEIN KINASE II SUBUNIT ALPHA 152 223 IPR045216 GO:0004674|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01612 K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] - csv:101207500 523.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01707 Cla-Chr1:32001336 Cla08g01612 Cla-Chr8:28736555 2.24E-07 dispersed
Cla08g01612 Cla-Chr8:28736555 Cla11g01852 Cla-Chr11:32061152 1.14E-32 dispersed
Cla01g01698 Cla-Chr1:31902335 Cla08g01612 Cla-Chr8:28736555 4.43E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g668 . . . . . . . . . Cmo12g00528 . . . Car12g00534 Sed14g1515 . Cpe07g00511 Bhi04g00405 Tan02g1754 Cmetu11g0428 . Hepe08g1323 . Lcy13g2126 Cla08g01612 Cam08g2113 Cec08g1699 Cco08g1822 Clacu08g1798 . Cre08g1581 . . . . . . . Cme03g02093 . . . . . . . . . . . Cma12g00590 . . . . . . . . . . . . . . . . . . . Lsi08g01516 Csa02g01904 Chy03g01582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000622 5 3 4 4 5 3 4 3 3 3 3 3 5 2 3 3 3 5 3 3 3 4 3 3 2 3 3 5 4 3 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80767 PF00069 Pkinase 3.30E-47 CL0016 Cla PK