Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01616 ATGAAAGCAGTCTCCAATCTCACTTCCTCACTTCCTCTTTCGCCCTCACCGTCACCGTCACCGTCACCTTCGCACTACAGGACCACCGCGGTCTTCACTCCTCGTCGACGGATCGCTTCCTCGTTAGCCATCGGCGGCGCTTTCTCGTCGTGTCGTACACATTTGACTCGGTTTCCACAGCATCGATCTTCGTTTTCGCCTCTGCGATGCAATGTGAGAGAGACGGTGCCGGATCAAGAAATGGCGTCCACCAATGAACAAGACCCACGCATAGCCAAAATCTCCAAGGCCATTCGAGTTATCCCAGATTTTCCTAAACCAGGTACCCATCTTGTTTTCATTGAAACCTCGAATGGTCGTTTCTGGCTGAGAGATCCATTTTTGCTGTCTTTATGCTCATTTGGGTTTTGTTCGTGTGTGATGGGGATTTTGTTTCAGGATATTACAACTTTGCTTCTTGATACAAAGGCCTTCAAGGACACTATCGATTTGTTCGTGGAGAGGTACAGAGGGAAGGATATCTCTGTCGTCGCTGGAATTGAGGCGAGGGGTTTCATTTTTGGCCCTCCGATAGCTCTGGCTATTGGTGCAAAATTTGTTCCCATGAGAAAACCCAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCTTTAGAGTATGGAACCGATAAAATAGAGATGCATGTAGGAGCTGTTGAAGCTGGGGAACGTGCTCTTGTGATAGATGATCTCATTGCAACTGGGGGAACCTTGTCTGCAGCAATAAGGCTACTTGGTAGGGCTGTGATTTCCAAAACTTGCTCAGTTCTAGGCCTCAGCTTATTCTTTGAATCTGAGCGAGTTGGCGTTGATGTGGTCGAGTGTGCATGTGTGATTGAGCTGGACGGACTAAAGGGCCGTGAACAATTGGGAGGCAGACCTCTATTCGTTCTAGTTAATGCAGCAGGATGA 954 48.01 MKAVSNLTSSLPLSPSPSPSPSPSHYRTTAVFTPRRRIASSLAIGGAFSSCRTHLTRFPQHRSSFSPLRCNVRETVPDQEMASTNEQDPRIAKISKAIRVIPDFPKPGTHLVFIETSNGRFWLRDPFLLSLCSFGFCSCVMGILFQDITTLLLDTKAFKDTIDLFVERYRGKDISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEAGERALVIDDLIATGGTLSAAIRLLGRAVISKTCSVLGLSLFFESERVGVDVVECACVIELDGLKGREQLGGRPLFVLVNAAG 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28758874 28762124 + ClCG08G016410.2 Cla08g01616 279271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01616 317 CDD PRTases_typeI 162 312 IPR000836 -
Cla08g01616 317 PANTHER BNAA09G27900D PROTEIN 280 315 - -
Cla08g01616 317 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 141 265 - -
Cla08g01616 317 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 85 112 - -
Cla08g01616 317 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 280 315 - -
Cla08g01616 317 Pfam Phosphoribosyl transferase domain 167 261 IPR000836 -
Cla08g01616 317 SUPERFAMILY PRTase-like 140 307 IPR029057 -
Cla08g01616 317 MobiDBLite consensus disorder prediction 1 27 - -
Cla08g01616 317 PANTHER BNAA09G27900D PROTEIN 141 265 - -
Cla08g01616 317 PANTHER BNAA09G27900D PROTEIN 85 112 - -
Cla08g01616 317 Hamap Adenine phosphoribosyltransferase [apt]. 128 315 IPR005764 GO:0003999|GO:0005737|GO:0006168
Cla08g01616 317 Gene3D - 81 316 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01616 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101208231 402.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01342 Cla-Chr8:26263678 Cla08g01616 Cla-Chr8:28758874 3.72E-73 dispersed
Cla08g01616 Cla-Chr8:28758874 Cla10g00278 Cla-Chr10:3641135 1.21E-70 dispersed
Cla08g01616 Cla-Chr8:28758874 Cla01g00375 Cla-Chr1:4150042 3.20E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g660 . . . . . . . . Cmo05g00147 Cmo12g00534 . . . Car12g00538 Sed10g1207 . . Bhi04g00409 Tan02g1743 Cmetu03g0036 . Hepe08g1328 . Lcy13g2129 Cla08g01616 Cam08g2118 Cec08g1703 Cco08g1826 Clacu08g1803 . Cre08g1585 . . . Cone20ag0230 . . . Cme03g02097 Blo17g00861 . . . . Bpe05g00045 . Bma05g00056 . . . Cma12g00594 Cma05g00145 Car05g00126 . . . . . . . . . . . . . . . . . Lsi08g01520 Csa02g01900 Chy03g01586 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla11g00360 . 73 557 PRT Gene Family AT2G16570 85.2 6.1e-243 837.0
Cla11g00360 . 73 557 PRT Gene Family AT4G34740 86.0 1.6e-243 839.0
Cla11g00360 . 28 530 PRT Gene Family AT4G38880 70.4 1.7e-199 692.6
Cla01g00375 . 7 180 PRT Gene Family AT1G27450 74.7 9.6e-73 270.0
Cla08g01616 . 81 316 PRT Gene Family AT1G27450 63.6 8.1e-72 266.9
Cla08g01342 . 11 179 PRT Gene Family AT1G27450 70.6 9.6e-65 243.4
Cla10g00278 . 1 202 PRT Gene Family AT1G27450 53.7 1.5e-54 209.5
Cla01g00375 . 30 180 PRT Gene Family AT1G80050 75.5 6.7e-62 233.8
Cla08g01342 . 33 168 PRT Gene Family AT1G80050 80.9 8.4e-57 216.9
Cla08g01616 . 144 313 PRT Gene Family AT1G80050 62.4 9.7e-53 203.4
Cla10g00278 . 30 202 PRT Gene Family AT1G80050 54.5 5.1e-46 181.0
Cla01g00375 . 6 104 PRT Gene Family AT4G22570 82.8 5.4e-44 173.7
Cla10g00278 . 5 95 PRT Gene Family AT4G22570 85.7 1.5e-41 165.6
Cla08g01342 . 11 100 PRT Gene Family AT4G22570 78.9 2.2e-37 151.8
Cla01g00375 . 1 96 PRT Gene Family AT4G12440 84.4 8.7e-41 162.9
Cla10g00278 . 1 95 PRT Gene Family AT4G12440 82.1 1.8e-38 155.2
Cla08g01342 . 4 99 PRT Gene Family AT4G12440 78.1 3.4e-37 151.0
Cla08g01342 . 1 148 PRT Gene Family AT5G11160 81.1 4.4e-64 241.1
Cla01g00375 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.2
Cla08g01616 . 88 260 PRT Gene Family AT5G11160 59.5 2.1e-50 195.7
Cla10g00278 . 8 131 PRT Gene Family AT5G11160 65.2 3.8e-44 174.9
Cla08g00735 . 1 186 PRT Gene Family AT1G71750 65.0 1.8e-69 259.2
Cla09g02102 . 95 513 PRT Gene Family AT1G55810 88.8 3.1e-221 764.6
Cla05g01259 . 56 519 PRT Gene Family AT1G55810 73.5 1.5e-199 692.6
Cla09g02102 . 110 522 PRT Gene Family AT3G27440 76.1 1.6e-184 642.5
Cla05g01259 . 117 519 PRT Gene Family AT3G27440 75.4 9.2e-180 626.7
Cla05g01259 . 41 519 PRT Gene Family AT3G27190 86.0 9.4e-245 842.8
Cla09g02102 . 95 512 PRT Gene Family AT3G27190 81.1 3.6e-204 708.0
Cla04g00768 . 3 291 PRT Gene Family AT3G53900 65.4 2.4e-105 379.0
Cla09g02102 . 73 513 PRT Gene Family AT4G26510 84.0 4.9e-222 767.3
Cla05g01259 . 48 519 PRT Gene Family AT4G26510 75.8 7.3e-210 726.9
Cla05g01259 . 45 519 PRT Gene Family AT5G40870 87.0 9.5e-245 842.8
Cla09g02102 . 95 515 PRT Gene Family AT5G40870 79.6 1.2e-202 703.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139