Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g01617 | ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCCATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAAGTATTCCAATGAGCTTCAATTGCCCAACAATGGCGGCAGTAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTACAGAGTAATTGTAAACAGGACATAAGGAGCTGCAGTAGCTGCAGTACTACCGATAATTCTAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTATTTTATGCCAATTGATGAGAGGAATTTTGGGTCTTCGTTTTTTTCTGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCGCCGCCGCCGCCGCTGAAGGGGAAGATTCCAGCATGGAGAGATTCATTGAGAATAATGTACTACTGGGTAGCCACCCGCCGCCGTCGCCGGTCGTAGATTCCAACGGTGCCAGAAACAAACCAATTGTATTGAAGAGGAAAGTCAATGAGGGGGACATTTCTGATAATCAGAAGAAAAAATCTCGGATCTCCTCACACGGGCAGAAGAAGAAGAAAACAGAGGAGAGGAGAGGAGGGGAAAGTGTAGAGGAAGAAGGGAATACAGGTGGAGCATCAGAAGGACAGAGCTCCATTAGTTACAGTTCCGATCAGGAAGAGAATGGTTCCGAGGAGGGAAACGGCGGCGGCTTCAACAGGAAAAGCAGAGCAAGCAGAGGATCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGAGAAAGAATCAATGAGCGATTGAGAATCTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATCGACCTTGGCCTTCACCAGAAGCTCTCTCCATTTCTATCACATTGA | 996 | 45.58 | MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAKYSNELQLPNNGGSSWFYSLDAFVPNLQSNCKQDIRSCSSCSTTDNSSASVLIPNSSDYFMPIDERNFGSSFFSDVLIEEVDNALAAAAAAEGEDSSMERFIENNVLLGSHPPPSPVVDSNGARNKPIVLKRKVNEGDISDNQKKKSRISSHGQKKKKTEERRGGESVEEEGNTGGASEGQSSISYSSDQEENGSEEGNGGGFNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGIDLGLHQKLSPFLSH | 331 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 28777277 | 28779402 | + | ClCG08G016420.1 | Cla08g01617 | 279272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g01617 | 331 | Pfam | Helix-loop-helix DNA-binding domain | 255 | 295 | IPR011598 | GO:0046983 | |
| Cla08g01617 | 331 | MobiDBLite | consensus disorder prediction | 206 | 229 | - | - | |
| Cla08g01617 | 331 | PANTHER | TRANSCRIPTION FACTOR BHLH84-LIKE | 5 | 328 | - | - | |
| Cla08g01617 | 331 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 245 | 294 | IPR011598 | GO:0046983 | |
| Cla08g01617 | 331 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 245 | 307 | IPR036638 | GO:0046983 | |
| Cla08g01617 | 331 | MobiDBLite | consensus disorder prediction | 162 | 257 | - | - | |
| Cla08g01617 | 331 | SMART | finulus | 251 | 300 | IPR011598 | GO:0046983 | |
| Cla08g01617 | 331 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 5 | 328 | - | - | |
| Cla08g01617 | 331 | Gene3D | - | 247 | 310 | IPR036638 | GO:0046983 | |
| Cla08g01617 | 331 | MobiDBLite | consensus disorder prediction | 162 | 201 | - | - | |
| Cla08g01617 | 331 | CDD | bHLH_AtIND_like | 246 | 308 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla05g02102 | Cla08g01617 | CCT | |
| Cla05g02102 | Cla08g01617 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g00691 | Cla-Chr4:21710870 | Cla08g01617 | Cla-Chr8:28777277 | 6.17E-19 | dispersed | |
| Cla08g01617 | Cla-Chr8:28777277 | Cla10g00998 | Cla-Chr10:23287766 | 2.98E-55 | dispersed | |
| Cla02g00161 | Cla-Chr2:1690548 | Cla08g01617 | Cla-Chr8:28777277 | 8.52E-11 | transposed | |
| Cla03g00820 | Cla-Chr3:10472168 | Cla08g01617 | Cla-Chr8:28777277 | 9.88E-26 | transposed | |
| Cla02g00679 | Cla-Chr2:7836120 | Cla08g01617 | Cla-Chr8:28777277 | 4.13E-50 | wgd | |
| Cla05g02102 | Cla-Chr5:32621736 | Cla08g01617 | Cla-Chr8:28777277 | 3.85E-62 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61623 | PF00010 | HLH | 9.80E-09 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g01617 | - | - | cmax:111491997 | 467.618 |