Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01618 ATGGTTAACAACGCCCTTCTTGAAGCCCTTAATGTCCGTGTCCTCGGCACCGGCGACCGTTCTCTGGTCCTGGCCCATGGCTTCGGCACCGACCAGTCCGCTTGGCAACTCATTTACCCTTCCTTTACTCCTTACTACCGCGTCATCCTTTACGACCTTGTCTGCGCCGGTAGCGTCAACCCCGACTTCTTCGATTTCTCCCGCTACACCACTCTCGACGCCTTCGTCGACGATCTCATCTCCATCCTAGACTCTCTCCACGTCCACCGCTGCGCCTTTGTCGGCCACTCCGTCTCCGCCATGGTCGGCATCCTCGCCTCCATCCGCCGTCCCGAACTCTTCTCTAAGCTCATCTTAATCGGCGCCTCCCCAAGGTTCCTCAACGACGGCGACTACCACGGTGGGTTCGAACAGAGCGAGATTGACAGGGTCTTCGCTGCAATGAAGGCTAATTACCAATCCTGGGTCAACGGCTTTGCCCCTCTTGCTGTCGGTGCCGATGTTCCCGCTGCCGTTCAGGAATTCAGCCGGACTCTCTTCAATATGAGACCCGACATTTCCCTCTTCGTCTCTAAGGTCATCTTCAGCAGCGATCTCCGGGGAGTCCTCGGTCTCGTCAAAGTCCCCTGTTGCATAATTCAAACCGCCCAAGACGTCTCTGTTCCGGCCTCCGTCGCTATCTACCTCCGAGACCACCTCGGCGGCCGGAACACCGTGGAGATGCTCGACACCGAAGGCCACCTACCCCATCTGAGTGCCCCTCAGCTACTCGTACGGAAACTCCGCCGTGCTCTTTCCCGGTGA 804 58.08 MVNNALLEALNVRVLGTGDRSLVLAHGFGTDQSAWQLIYPSFTPYYRVILYDLVCAGSVNPDFFDFSRYTTLDAFVDDLISILDSLHVHRCAFVGHSVSAMVGILASIRRPELFSKLILIGASPRFLNDGDYHGGFEQSEIDRVFAAMKANYQSWVNGFAPLAVGADVPAAVQEFSRTLFNMRPDISLFVSKVIFSSDLRGVLGLVKVPCCIIQTAQDVSVPASVAIYLRDHLGGRNTVEMLDTEGHLPHLSAPQLLVRKLRRALSR 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28794190 28795569 + ClCG08G016430.1 Cla08g01618 279273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01618 267 Gene3D alpha/beta hydrolase 2 266 IPR029058 -
Cla08g01618 267 PANTHER ESTERASE-RELATED 3 266 - -
Cla08g01618 267 PANTHER STRIGOLACTONE ESTERASE D14 3 266 IPR031143 GO:0010223|GO:0016787|GO:1901601
Cla08g01618 267 SUPERFAMILY alpha/beta-Hydrolases 10 266 IPR029058 -
Cla08g01618 267 Pfam Alpha/beta hydrolase family 22 259 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01618 - - - csv:101208472 525.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01687 Cla-Chr1:31829966 Cla08g01618 Cla-Chr8:28794190 3.14E-96 dispersed
Cla08g01618 Cla-Chr8:28794190 Cla10g01696 Cla-Chr10:32739771 4.10E-82 dispersed
Cla08g01618 Cla-Chr8:28794190 Cla02g01219 Cla-Chr2:25862703 4.04E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g652 Blo01g01495 . . . Bpe02g00453 . . Bma01g02246 Cmo05g00144 Cmo12g00536 . . . . Sed11g0920 . . Bhi04g00412 Tan02g1739 Cmetu03g1463 . Hepe08g1330 . . Cla08g01618 Cam08g2120 Cec08g1705 Cco08g1828 Clacu08g1805 . Cre08g1587 Cone4ag1613 Cone7ag1338 Cone17ag0885 Cone20ag0232 . . . Cme03g02099 . . . . . . . . . . . . Cma05g00142 Car05g00124 . Cpe11g00123 . . . . . . . . . . . . . . . Lsi08g01524 Csa02g01898 Chy03g01588 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005527 2 1 2 5 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 2 1 0 1 1 1 1 1 40