Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01622 GTTGGGCCAAACCGTCTCCGCAGTTTGGATCTGGTAGCCCAATCACACGGAAGCCCAGAGCGACCATCTTTCTTCTCACCGAAGAATCAAGTGGGGAAGATACTGTTGCAGAAAATAGATAGAGACAGAGAGGAAGATACAGCGTTTTTGCATGAGGGCAAAGATGCTTGGAGAATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAACCAGCTCTTTGCAACTTTCCAATCACAAGGACATTGTCTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACAGAGGGGAGATATTTGTTGTCTGGAGCATCAGATGCATCAGCTGCTGTTTTTGATATTCAACGTGCAACTCACTCCGAGGGTCTTATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGACATCAATATGCAGTATCCTCAGCCATATGGTATCCCGTTGATACTGGATTGTTTGTCACTGGCTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAATTGCCTGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTTCGCCTTTGTGATATTTCTTCTGGAGCATTTTCTCACACATTATCTGGACATCGTGATGGTGTAATGAGTGTAGCATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGAGGATGTGATGGAGCTATACGCTTTTGGGACATCAGACGAGCTGGATGCTTTCGTGTTCTAGATCAGTCTCAATCTCAGCTTGGGAGACGTCCCCCTATTTCAGGATGGACTGCAAATAAGATTAACAGATTTCATGTTACCCTTTCTCAGCTCTCAACATCTAAGTCCCTCTTGGCCAGCCAAGGTTCAAATATGAAATCTCGCATACCTCATAAGAAACTAGCCAATGGAAATGCAACAAAGCCATCAGCCACAGGTAAACTGCCGGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCCAGTCAGGATCGAGCAGTTTCTCACTATGGTGCTGTCACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTATGGGACGTTGAATCCGGGTGCAATACACTCGTGAATTATGAAACCATGCGGTTACAGACCAATAAACCATTGCAATTAGCCACATCTGAGGATTCAGCCCTTGTATTTGCCCCATGCATGGCGACTGTTAAAGCATTTGATATGTGGACAGGGAAGACATCCCTGACATTCAGCGGCCACTATGAAGGTGTGAACTGTTGCTGGTATAATTTCCCAGATCAGGAACTGTACACCGGTGGCAATGATAGGCAAATTCTCGTCTGGTCACCATCCCGAAACTCTACCGAACTGTGGACTCGCAGGATTGGGAATCGACTGCAGACAGGGATAACTGGAGCGACTGACTGTCGTCGACAAGGAAGTTTGGTTTCAATGCTGATGCCATCCATCAGACTCTGCTCACCATGTACATAA 1626 45.51 VGPNRLRSLDLVAQSHGSPERPSFFSPKNQVGKILLQKIDRDREEDTAFLHEGKDAWRMWKDIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRATHSEGLIAKHQCIFAVDKQHEHGHQYAVSSAIWYPVDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVAWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKINRFHVTLSQLSTSKSLLASQGSNMKSRIPHKKLANGNATKPSATGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPLQLATSEDSALVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGNDRQILVWSPSRNSTELWTRRIGNRLQTGITGATDCRRQGSLVSMLMPSIRLCSPCT 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28828803 28834638 - ClCG08G016470.1 Cla08g01622 279277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01622 541 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Cla08g01622 541 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Cla08g01622 541 PRINTS G protein beta WD-40 repeat signature 175 189 IPR020472 -
Cla08g01622 541 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 59 499 IPR042238 GO:0006283
Cla08g01622 541 ProSitePatterns Trp-Asp (WD) repeats signature. 262 276 IPR019775 -
Cla08g01622 541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 374 410 - -
Cla08g01622 541 MobiDBLite consensus disorder prediction 333 363 - -
Cla08g01622 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 197 IPR001680 GO:0005515
Cla08g01622 541 Pfam WD domain, G-beta repeat 239 275 IPR001680 GO:0005515
Cla08g01622 541 Pfam WD domain, G-beta repeat 376 406 IPR001680 GO:0005515
Cla08g01622 541 Pfam WD domain, G-beta repeat 156 188 IPR001680 GO:0005515
Cla08g01622 541 Pfam WD domain, G-beta repeat 456 493 IPR001680 GO:0005515
Cla08g01622 541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 155 191 - -
Cla08g01622 541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 277 - -
Cla08g01622 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 415 IPR001680 GO:0005515
Cla08g01622 541 SMART WD40_4 368 406 IPR001680 GO:0005515
Cla08g01622 541 SMART WD40_4 454 493 IPR001680 GO:0005515
Cla08g01622 541 SMART WD40_4 143 188 IPR001680 GO:0005515
Cla08g01622 541 SMART WD40_4 235 275 IPR001680 GO:0005515
Cla08g01622 541 SMART WD40_4 90 130 IPR001680 GO:0005515
Cla08g01622 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 284 IPR001680 GO:0005515
Cla08g01622 541 SUPERFAMILY WD40 repeat-like 97 497 IPR036322 GO:0005515
Cla08g01622 541 MobiDBLite consensus disorder prediction 1 27 - -
Cla08g01622 541 Gene3D - 59 355 IPR015943 GO:0005515
Cla08g01622 541 Gene3D - 356 496 IPR015943 GO:0005515
Cla08g01622 541 ProSitePatterns Trp-Asp (WD) repeats signature. 393 407 IPR019775 -
Cla08g01622 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 461 493 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01622 K10570 ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8 - csv:101209203 857.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01622 Cla-Chr8:28828803 Cla10g01641 Cla-Chr10:32042714 2.58E-10 dispersed
Cla08g01622 Cla-Chr8:28828803 Cla06g01715 Cla-Chr6:30699833 2.77E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36