Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01625 ATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTTGAAGAGCCACCGCAGTCCCCAGAGTCACTTGCGACGAGAGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTGAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTAAACTACGAGGAAGCCCGAGCTTTGCTGGGGAGACTTGAATATCAAAGAGGAAATTTTGATGCTGCCCTACAGGTATTTCAAGGAATAGACATTAGATCTTTGACGCCAAGAATGGTTAAGGCAATCACTGAAAAGATAAGAGAGTATAAGCCTCGTCCTAAAGGTGACAATGCCCTCCCTAGTGGTGTAATGTCCATGCATTCTGTTAGCCTACTACTTGAGGCAATTTTACTCAAGGCAAAATCACTGGAGGAACTTGGCAAATATATAGAGTCTGCAAAAGAGTGCAGGATAATTCTTGATACAGTGGAATCAGCTCTGCCTAATGGAACGCCCGAGTGCATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTGCCTACTTTGTGGATTAAGGGAGGGTATCTTGATGAGGCCATAAACGCCTATCGCCGTGTCCTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGGACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCCCTTAAGTTTCATGTATTTGGTCCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTCTGTTGCTAATACTCATGAGGAAAGTGGTGATGCAGGAAATAAACTGGGATCCTGAGATTATGAATCATCTGACTTATGCACTTTCTATCACAAGACAATTTGAATTACTCGCTGAGCATGTAGAGCGGATCCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTATGTTACAATGCAGCAGGACAGAATGAAGCAGCTTTGAACCTTCTAATGAAAGTTTGCGGTTCCTCTGAAGTAAAGCACAAGCCCCATTTTCATTCTATTTTGTTGCTTGCAAAATTGTGTTCGGAGGATACAAAATATGCACGTGATGGAATTAAATTTGCTCATAGAATGATCAATATGGACAGTGAACAAGGTAAGCATTTCAATCCTGAAGCCCACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCTAGAGCGTCTGTGTCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCCCTACGAGTTTCTTCTCTCGATAGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCGGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGTTCCGGAAGAGGTTGGAAGCTTTTGACCCTCATACTTTCGGCTGAGAAGCGACTCAAGGACGCTGAAAGCATAGTTGATTTTGCTTTGGATGAAGCTGAGAGGATGGACCAATTGGATTTTCTTCGATTGAAAGCTGTCCTAAAAATTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGGATCTTGCTAGCACTAATTCAAGGGCGAGATGAACTTCAGCTTCAGGCTAAGAACTTTGACCAATCCAAGGACTTGGAACTGGAGGCAGTGGCAGAACGTAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCCTGGGCGGATGCAGAAATCTGTCTGAACAAAGCCAAGTCATTGGATGTTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTATTTTGAAGCTCGATCGTTACACAAGGAAGCCCTTGTTTCATTCTCTGTCTCTCTTTCGATCGATCCTGATTATATTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATGCGGTAACCAATCACTTCCAATTGCACGTAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGAGTGCTTTCCAAAATGGAAGGTCTGTTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCTGCTCCTCTTCAAAGTTTCGTCTAA 2151 42.96 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMVKAITEKIREYKPRPKGDNALPSGVMSMHSVSLLLEAILLKAKSLEELGKYIESAKECRIILDTVESALPNGTPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILMRKVVMQEINWDPEIMNHLTYALSITRQFELLAEHVERILPGIYSRAERWYFLALCYNAAGQNEAALNLLMKVCGSSEVKHKPHFHSILLLAKLCSEDTKYARDGIKFAHRMINMDSEQGKHFNPEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLDRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAEKRLKDAESIVDFALDEAERMDQLDFLRLKAVLKIAQEQPKQAIETYRILLALIQGRDELQLQAKNFDQSKDLELEAVAERNLERAAWQDLAAIYSKLASWADAEICLNKAKSLDVHCPRGWHTTGKYFEARSLHKEALVSFSVSLSIDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWFNLGVLSKMEGLLLQAADFFQAAHELQLSAPLQSFV 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28844733 28847429 + ClCG08G016490.2 Cla08g01625 279280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01625 716 Gene3D Tetratricopeptide repeat domain 543 712 IPR011990 GO:0005515
Cla08g01625 716 SMART tpr_5 607 640 IPR019734 GO:0005515
Cla08g01625 716 SMART tpr_5 512 545 IPR019734 GO:0005515
Cla08g01625 716 SMART tpr_5 318 351 IPR019734 GO:0005515
Cla08g01625 716 SMART tpr_5 573 606 IPR019734 GO:0005515
Cla08g01625 716 SMART tpr_5 677 710 IPR019734 GO:0005515
Cla08g01625 716 PANTHER PROTEIN NPGR1 1 716 - -
Cla08g01625 716 Gene3D Tetratricopeptide repeat domain 257 541 IPR011990 GO:0005515
Cla08g01625 716 Gene3D Tetratricopeptide repeat domain 40 234 IPR011990 GO:0005515
Cla08g01625 716 SUPERFAMILY TPR-like 513 688 IPR011990 GO:0005515
Cla08g01625 716 Coils Coil 485 505 - -
Cla08g01625 716 PANTHER PROTEIN NPG1 1 716 IPR043376 -
Cla08g01625 716 SUPERFAMILY TPR-like 317 545 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01625 Cla-Chr8:28844733 Cla11g01623 Cla-Chr11:29915612 3.97E-175 dispersed
Cla08g01625 Cla-Chr8:28844733 Cla05g00427 Cla-Chr5:3816421 4.91E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01625 K21843 - csv:101209448 1331.24