Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01635 ATGCCGATGTACCAGCCTGCTACTTGGAGAGAAGGGGATCCGAAGCTCGTCGTCGGCTGCGGTGCGCAGATTCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGCGGAGGCGGGGGGATAATCTGCGGCGGCGTTGGCGGTGGCGGTGGAGAGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCCATAGAGGTTCCATCGGTGTTCATTTGCCCAATCTCGCTGGAACCCATGCAAGATCCAGTGACCCTCTGCTCCGGGCAGACCTACGAGCGTTCCAACATTCTGAAATGGTTCTCTTTAGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCCGTCACACCGAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCGCAAAAGTACTTAGCATTGAAGAAAAGATCAGAGGATGTGCAGGGGAGAGTTTTAGAGCTTTTGGATTCGTTGAAGAAGGTCAAGGGTCAAGCTAGGGTTCAGTCCCTTAAAGATCTCCGACATGTCGTCACTACCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGTGTAGCTCTAATCTCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCGTGGGAATCCTTGTGAATTTGGATCTCGATTCAGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATTTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACGAAATTCATCAAGATGTTGATTGTGGGTGAGGATTTAAGAACAGAGAACGTTTCAAGTCTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGATACTCAAATGGTGTAACCGCGGGACTCAGTTTACTCCGAACGCTCTGTTCAAACGAACAAATCAGGAAGCAACTCGTCAGCATCGGCGCCGTCGCGAAACTCGGCGGCGCCCTCTCTAACTTAAACGCCGATTGTTTGGAAGCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCGGAAGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGAAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTCAATTTGCGTTGTCGATTTTATGGGCGGTGTTTAAGCTAGCGCCGGAGGAATGTGCGATGCTGGCGGTGGAGGCTGGATTGGCGGCGAAATTGCTGCTTGTAATCCAAAGTGGGTGCAATCCAGAGCTGAAACAGAGATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCTGATTCAATGTTCATTTCTAAATTGAAGATGGCGAGACTGAAACAAGCTAAAGAAGAAGCTGAAAGGGAAGTGGCGCATTATCGTGCTCACTTGGAGGCTGAATATCAGAAGAAGGTTTCTGAGTCAAGTTCTGGGTCCTATACACAACGGCTGGAAGAGGAAACCAAGGTTAAGATCGAGAATTTGAAGGAATCATCCGCAAGAGTTTCACATGATGTTGTTCAAATGCTTCTCCGATATGTTGCATCTGCCAGAACTTAG 1578 47.08 MPMYQPATWREGDPKLVVGCGAQILDLETVVKDGILGGGGGIICGGVGGGGGEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTTHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLIVGEDLRTENVSSLSLLVGLLRMVKDQRYSNGVTAGLSLLRTLCSNEQIRKQLVSIGAVAKLGGALSNLNADCLEAALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAMLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSMFISKLKMARLKQAKEEAEREVAHYRAHLEAEYQKKVSESSSGSYTQRLEEETKVKIENLKESSARVSHDVVQMLLRYVASART 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28938900 28944790 + ClCG08G016620.2 Cla08g01635 279290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01635 525 Pfam Vacuolar (H+)-ATPase G subunit 446 522 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cla08g01635 525 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Cla08g01635 525 SUPERFAMILY RING/U-box 66 140 - -
Cla08g01635 525 Gene3D - 444 525 - -
Cla08g01635 525 Gene3D - 151 433 IPR011989 -
Cla08g01635 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 150 IPR013083 -
Cla08g01635 525 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Cla08g01635 525 Pfam U-box domain 70 140 IPR003613 GO:0004842|GO:0016567
Cla08g01635 525 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 41 453 - -
Cla08g01635 525 PANTHER WDSAM1 PROTEIN 41 453 IPR045185 GO:0061630
Cla08g01635 525 SUPERFAMILY ARM repeat 159 440 IPR016024 -
Cla08g01635 525 Coils Coil 442 476 - -
Cla08g01635 525 CDD RING-Ubox_PUB 74 116 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02664 Cla-Chr5:37828138 Cla08g01635 Cla-Chr8:28938900 0 dispersed
Cla08g01635 Cla-Chr8:28938900 Cla05g01082 Cla-Chr5:11199364 2.58E-41 dispersed
Cla08g01635 Cla-Chr8:28938900 Cla01g01528 Cla-Chr1:29819686 2.75E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01635 - - csv:101211594 803.512