Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01637 ATGTTATGGATTTGTATTTTATTCGTGAAATATCAAGGATGTGGCAATGATGATGATAACGGAAGCACCTCACCGTATTTTGTTCGCAGGTGGGCATCTAAGTTGGATAATTTGGTTGGAGACACTTCAGTAGATGTGGATTGGAGACGCTCATTTTATTTGAACTTGATTGCTCACACTTCATTTACTGTGACTGTGGCAATTTGCAGTCATCTGGTTCTTCGAAATCATCAAGCAGGACATACTACATCATTGTCTCCTATATATAAGGTTGTTAAGACTGTTTATGCGTCTCCTAGCCGTGTCAATTTTCATTTGGATTCTAAGAAGGAAGTGGAGACAACACCTGCATATCCAGATATCTGTTTTGCAGTTGATGACTTTGACTCCACTTTTGATGCAGTGGTCTTGACAGAGACTGACCATTGCTATTGTGTACTTCTCAATGCACATGATGGTGCAGCTTTTCCCGCAAAGGACAATGCAGAAAATTGCAATTCTAATAATCTTATGGCCTCAAGTATGGATTCTGATTCTCAAAGTACGAGGAATTCCAAGATTACTCTTTTCTCTGGATTTGTGAGCTACCAAATGGTTCGAGATGCATATGACGCTGGCAAGTCTAGATTTGGCAGCCTTCTCTCTCTTGGTCATGCTTCTGGCAAAACAGACAAAATTTACATGAAGGGTCCTGGAGGACGTGGGGAAGTTGAAGTTGCTGTTTCTGGTGTTGCAGATCAAAGCCTACAGGATTTGGGGCCTTTTTCGCCTGTGGTATCAAAGACAGGATTTGGGATTGGCACCATCGTTAGAAAAGCAGCATCTGTAGCAACTGTGGCTGCAAAACAAGCTTATGCAGCTGCTAGTAGCAGTAGTTCTGATGATGAGATGATACCTCTCAAGTGTTGCTTGATGTCCATTTCATTGCCATGGGAGTACATCGCACACGATCTCTTGTTCAAGGGAAGTCCGCCAGTGAACTTGCACAGAAGTTTCAGGGAGGAGAGGAATCTTGCTGAAGAGATCTGGAATTTAACTCACAACCACCTACTTAGCAGCAGGCGCAATTTCCTCTCTTTTTTAGTAAAAGGCAATAGGAGCATACGGATGGGAAGCACTTCGCATTGCTTCTCCGTTGAGTTATTCTGTAATCTTAAGCAAATTGTGGCAGTGTTACAGTTGGTTTTACAAAAGCAACTTGCAAAGGAGGCACCTGACGACATCTCAAATTCCTGGCGGCAAGGTGTCTACTTAATTAAGAACTTGCATGTTAGCCTCCATTATCGGTTTACCTCACTCCTCCAAGTTTCATTTTACATGGCAATGCTGAATATGGCGGAAGATGGAGTTGGGTTTCAGTGTGAGGTACTTGAGAATGATCATGAGTTCACTGCCACTGAAATCGAAGAGCTTCTGTCACTCTTTCTAGCCAACGACGGGCCCCCAAGTCCCGGTTCCGATTCTCAGGGTTCGATGCGAACCTCGGCAACTTGTTCGACCAATGACGACGAGAGGAAGCTGCGGCGGATGATATCAAACCGGGAGTCGGCCCGGCGATCGCGGTGGAGGAAGAAGAGGCATTTGGAAGATCTGACTAACGAGGTGAATCGGTTGATGATCCAGAACCGGGAATTGAAGGAACGGCTCGGCCGGGTTTTGAACCACCGCCATGTGGTTTTGAGAGAAAATGATTGGTTGTGGATGGAGTCCGTGGGCCTTCGGGCCAGACTTTCGGATCTTTGCCGGATCTTGGCCGTCATTCAATAG 1767 45.16 MLWICILFVKYQGCGNDDDNGSTSPYFVRRWASKLDNLVGDTSVDVDWRRSFYLNLIAHTSFTVTVAICSHLVLRNHQAGHTTSLSPIYKVVKTVYASPSRVNFHLDSKKEVETTPAYPDICFAVDDFDSTFDAVVLTETDHCYCVLLNAHDGAAFPAKDNAENCNSNNLMASSMDSDSQSTRNSKITLFSGFVSYQMVRDAYDAGKSRFGSLLSLGHASGKTDKIYMKGPGGRGEVEVAVSGVADQSLQDLGPFSPVVSKTGFGIGTIVRKAASVATVAAKQAYAAASSSSSDDEMIPLKCCLMSISLPWEYIAHDLLFKGSPPVNLHRSFREERNLAEEIWNLTHNHLLSSRRNFLSFLVKGNRSIRMGSTSHCFSVELFCNLKQIVAVLQLVLQKQLAKEAPDDISNSWRQGVYLIKNLHVSLHYRFTSLLQVSFYMAMLNMAEDGVGFQCEVLENDHEFTATEIEELLSLFLANDGPPSPGSDSQGSMRTSATCSTNDDERKLRRMISNRESARRSRWRKKRHLEDLTNEVNRLMIQNRELKERLGRVLNHRHVVLRENDWLWMESVGLRARLSDLCRILAVIQ 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28958744 28969657 + ClCG08G016670.2 Cla08g01637 279292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01637 588 Coils Coil 528 548 - -
Cla08g01637 588 MobiDBLite consensus disorder prediction 481 504 - -
Cla08g01637 588 MobiDBLite consensus disorder prediction 482 498 - -
Cla08g01637 588 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 503 552 IPR004827 GO:0003700|GO:0006355
Cla08g01637 588 Pfam Uncharacterized conserved protein (DUF2045) 6 244 IPR019141 -
Cla08g01637 588 SMART brlzneu 501 565 IPR004827 GO:0003700|GO:0006355
Cla08g01637 588 Pfam bZIP transcription factor 505 555 IPR004827 GO:0003700|GO:0006355
Cla08g01637 588 PANTHER ZGC:172139 8 321 - -
Cla08g01637 588 SUPERFAMILY Leucine zipper domain 505 555 IPR046347 GO:0003700|GO:0006355
Cla08g01637 588 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 508 523 IPR004827 GO:0003700|GO:0006355
Cla08g01637 588 PANTHER ZGC:172139 8 321 IPR019141 -
Cla08g01637 588 Gene3D - 503 556 - -
Cla08g01637 588 CDD bZIP_plant_GBF1 506 557 IPR045314 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01637 - - - csv:101212073 591.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01750 Cla-Chr5:29347827 Cla08g01637 Cla-Chr8:28958744 6.27E-06 dispersed
Cla08g01637 Cla-Chr8:28958744 Cla05g02362 Cla-Chr5:35204935 2.94E-14 dispersed
Cla05g02661 Cla-Chr5:37808125 Cla08g01637 Cla-Chr8:28958744 2.22E-28 transposed
Cla01g01738 Cla-Chr1:32257965 Cla08g01637 Cla-Chr8:28958744 1.86E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g617 . . . . . . . . Cmo05g00132 . . . . . Sed10g1161 . . Bhi04g00450 Tan02g1701 Cmetu03g2266 . Hepe08g1348 . Lcy13g2150 Cla08g01637 Cam08g2141 Cec08g1728 Cco08g1848 Clacu08g1829 . Cre08g1612 . . Cone17ag0898 Cone20ag0240 . . . Cme03g02120 . . . Bda01g01640 . . . . . . . . Cma05g00127 Car05g00108 . Cpe11g00108 . . . . . . . . . . . . . . . Lsi08g01542 Csa02g01876 Chy03g01610 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004132 2 1 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 9 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61625 PF09741 DUF2045 1.20E-63 No_clan Cla TF