Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01641 ATGAAGTCGATGAATGAGAATGAGAATAGTAGTAATAATAATAACATTAATAATAGTTGGTTGGGATTCTCTCTTTCTCCTCACATGAAAATGGAGGTCACTTCTTCTGATCATCCTTACACTCAACACCATTCTCACTCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACCACAACAATACTGAAATCTTTTATGGAATTCCTGATAATTCCTCTCTTCACCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTGCCGAGTTCTTCACCGAAGCTTGAGGATTTTCTTGGTGGTGCAACAATGGGGAATCGAGGAGGCTATTTCAATCAAAATGCTGAATCTGAAACCGACAAGGAACATTCTTTGGACCTTCTTCACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCAAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCAGCTAATGACGACGAAATCCCTTGTCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCTACACATAATACTCTGGAGCAGCATATTACCGGCAGCGCTCTTGTGAATGACGGAAGCGGTGGCGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCTTTCACGGCTTCCGGCCAGATCTCCCCTACTGGAGGTGACGGCGGGGCCGTGGAAACTAAAAAAAGAGGCGCCGGAAAACTCTGCCAGAAACAACCCGTTCACCGCAAGTCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACCGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGAAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGACCCTCTACCCATATAAATTTTCCATTGGAAAATTATCAGACTGAATTAGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGCTTTTCAAGAGGCGCTTCTGTTTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAACAAAGACCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACCAAGCAGTGATACGACCGTCGTTCCCTACGACTCCTCGGTTGCAGCAAACAACAATGTCGGGATCGGGATTGGGATTGAAATCAATCCCGACGACAACGGTGCGAATGGGAATGGTAATGATTGGAAGATGGCATTGTATCAAAATCCATCACATCAACAACAGGTTTGTGTTGCGGAATCATTGGATCATCATCACAATAAATCCATGATTGTATCGGGAGGTTATCGAAACACTTCGTTTTCGATGGCATTGCAGGATTTGATTGGAATTGAATCGTTGAATGCTAGTACTCATGGGATTGAGGATGATGTGAGCAAACAAGTGACTCATTTTTCAAATTCATCGTCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGATAAGACGAATCTGTCAATGCCGTTTGGAAAACCCCCACCCTTGATGGCATCAAAGTTAATTGGTGCAACGAGCGGGGTCGGGGTCGGTGCTTGGTACCCATCACCACAGCAGTTGAGGCCAACAGCGGCCATTTCAATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAA 2046 44.77 MKSMNENENSSNNNNINNSWLGFSLSPHMKMEVTSSDHPYTQHHSHSASNPFYLSPHFNHNNTEIFYGIPDNSSLHHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGNRGGYFNQNAESETDKEHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPANDDEIPCLRNWVSRSHYSATHNTLEQHITGSALVNDGSGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGGAVETKKRGAGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVEPSSDTTVVPYDSSVAANNNVGIGIGIEINPDDNGANGNGNDWKMALYQNPSHQQQVCVAESLDHHHNKSMIVSGGYRNTSFSMALQDLIGIESLNASTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNLSMPFGKPPPLMASKLIGATSGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29034235 29037271 + ClCG08G016720.2 Cla08g01641 279296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01641 681 MobiDBLite consensus disorder prediction 245 266 - -
Cla08g01641 681 SMART rav1_2 406 470 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 SMART rav1_2 304 376 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 CDD AP2 405 466 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 MobiDBLite consensus disorder prediction 245 283 - -
Cla08g01641 681 Gene3D AP2/ERF domain 406 466 IPR036955 GO:0003700|GO:0006355
Cla08g01641 681 Gene3D AP2/ERF domain 303 372 IPR036955 GO:0003700|GO:0006355
Cla08g01641 681 ProSiteProfiles AP2/ERF domain profile. 304 370 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 CDD AP2 303 370 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 ProSiteProfiles AP2/ERF domain profile. 406 464 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 Pfam AP2 domain 405 456 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 Pfam AP2 domain 304 362 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 SUPERFAMILY DNA-binding domain 405 466 IPR016177 GO:0003677
Cla08g01641 681 SUPERFAMILY DNA-binding domain 303 372 IPR016177 GO:0003677
Cla08g01641 681 PRINTS Ethylene responsive element binding protein signature 305 316 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 PRINTS Ethylene responsive element binding protein signature 446 466 IPR001471 GO:0003700|GO:0006355
Cla08g01641 681 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 678 - -
Cla08g01641 681 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 16 678 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01959 Cla-Chr10:35434753 Cla08g01641 Cla-Chr8:29034235 5.90E-33 dispersed
Cla02g02264 Cla-Chr2:37751304 Cla08g01641 Cla-Chr8:29034235 3.97E-114 transposed
Cla05g02244 Cla-Chr5:34097982 Cla08g01641 Cla-Chr8:29034235 9.75E-82 transposed
Cla05g02656 Cla-Chr5:37771031 Cla08g01641 Cla-Chr8:29034235 1.85E-172 transposed
Cla06g01263 Cla-Chr6:25861007 Cla08g01641 Cla-Chr8:29034235 9.61E-82 transposed
Cla06g01334 Cla-Chr6:26737601 Cla08g01641 Cla-Chr8:29034235 5.22E-120 transposed
Cla07g01336 Cla-Chr7:30575443 Cla08g01641 Cla-Chr8:29034235 5.96E-136 transposed
Cla08g00891 Cla-Chr8:21378801 Cla08g01641 Cla-Chr8:29034235 2.22E-06 transposed
Cla09g00312 Cla-Chr9:3021600 Cla08g01641 Cla-Chr8:29034235 1.08E-42 transposed
Cla10g00737 Cla-Chr10:12068184 Cla08g01641 Cla-Chr8:29034235 3.43E-104 transposed
Cla10g01418 Cla-Chr10:29236469 Cla08g01641 Cla-Chr8:29034235 1.20E-10 transposed
Cla10g01504 Cla-Chr10:30265620 Cla08g01641 Cla-Chr8:29034235 3.46E-41 transposed
Cla11g00873 Cla-Chr11:14128578 Cla08g01641 Cla-Chr8:29034235 1.00E-116 transposed
Cla01g01741 Cla-Chr1:32305915 Cla08g01641 Cla-Chr8:29034235 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61627 PF00847 AP2 1.60E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01641 K09285 - csv:101212797 1201.42