Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01641 | ATGAAGTCGATGAATGAGAATGAGAATAGTAGTAATAATAATAACATTAATAATAGTTGGTTGGGATTCTCTCTTTCTCCTCACATGAAAATGGAGGTCACTTCTTCTGATCATCCTTACACTCAACACCATTCTCACTCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACCACAACAATACTGAAATCTTTTATGGAATTCCTGATAATTCCTCTCTTCACCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTGCCGAGTTCTTCACCGAAGCTTGAGGATTTTCTTGGTGGTGCAACAATGGGGAATCGAGGAGGCTATTTCAATCAAAATGCTGAATCTGAAACCGACAAGGAACATTCTTTGGACCTTCTTCACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCAAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCAGCTAATGACGACGAAATCCCTTGTCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCTACACATAATACTCTGGAGCAGCATATTACCGGCAGCGCTCTTGTGAATGACGGAAGCGGTGGCGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCTTTCACGGCTTCCGGCCAGATCTCCCCTACTGGAGGTGACGGCGGGGCCGTGGAAACTAAAAAAAGAGGCGCCGGAAAACTCTGCCAGAAACAACCCGTTCACCGCAAGTCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACCGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGAAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGACCCTCTACCCATATAAATTTTCCATTGGAAAATTATCAGACTGAATTAGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGCTTTTCAAGAGGCGCTTCTGTTTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAACAAAGACCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACCAAGCAGTGATACGACCGTCGTTCCCTACGACTCCTCGGTTGCAGCAAACAACAATGTCGGGATCGGGATTGGGATTGAAATCAATCCCGACGACAACGGTGCGAATGGGAATGGTAATGATTGGAAGATGGCATTGTATCAAAATCCATCACATCAACAACAGGTTTGTGTTGCGGAATCATTGGATCATCATCACAATAAATCCATGATTGTATCGGGAGGTTATCGAAACACTTCGTTTTCGATGGCATTGCAGGATTTGATTGGAATTGAATCGTTGAATGCTAGTACTCATGGGATTGAGGATGATGTGAGCAAACAAGTGACTCATTTTTCAAATTCATCGTCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGATAAGACGAATCTGTCAATGCCGTTTGGAAAACCCCCACCCTTGATGGCATCAAAGTTAATTGGTGCAACGAGCGGGGTCGGGGTCGGTGCTTGGTACCCATCACCACAGCAGTTGAGGCCAACAGCGGCCATTTCAATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAA | 2046 | 44.77 | MKSMNENENSSNNNNINNSWLGFSLSPHMKMEVTSSDHPYTQHHSHSASNPFYLSPHFNHNNTEIFYGIPDNSSLHHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGNRGGYFNQNAESETDKEHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPANDDEIPCLRNWVSRSHYSATHNTLEQHITGSALVNDGSGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGGAVETKKRGAGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVEPSSDTTVVPYDSSVAANNNVGIGIGIEINPDDNGANGNGNDWKMALYQNPSHQQQVCVAESLDHHHNKSMIVSGGYRNTSFSMALQDLIGIESLNASTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNLSMPFGKPPPLMASKLIGATSGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT | 681 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29034235 | 29037271 | + | ClCG08G016720.2 | Cla08g01641 | 279296 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01641 | 681 | MobiDBLite | consensus disorder prediction | 245 | 266 | - | - | |
Cla08g01641 | 681 | SMART | rav1_2 | 406 | 470 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | SMART | rav1_2 | 304 | 376 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | CDD | AP2 | 405 | 466 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | MobiDBLite | consensus disorder prediction | 245 | 283 | - | - | |
Cla08g01641 | 681 | Gene3D | AP2/ERF domain | 406 | 466 | IPR036955 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | Gene3D | AP2/ERF domain | 303 | 372 | IPR036955 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | ProSiteProfiles | AP2/ERF domain profile. | 304 | 370 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | CDD | AP2 | 303 | 370 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | ProSiteProfiles | AP2/ERF domain profile. | 406 | 464 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | Pfam | AP2 domain | 405 | 456 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | Pfam | AP2 domain | 304 | 362 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | SUPERFAMILY | DNA-binding domain | 405 | 466 | IPR016177 | GO:0003677 | |
Cla08g01641 | 681 | SUPERFAMILY | DNA-binding domain | 303 | 372 | IPR016177 | GO:0003677 | |
Cla08g01641 | 681 | PRINTS | Ethylene responsive element binding protein signature | 305 | 316 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | PRINTS | Ethylene responsive element binding protein signature | 446 | 466 | IPR001471 | GO:0003700|GO:0006355 | |
Cla08g01641 | 681 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 16 | 678 | - | - | |
Cla08g01641 | 681 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 16 | 678 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla10g01959 | Cla-Chr10:35434753 | Cla08g01641 | Cla-Chr8:29034235 | 5.90E-33 | dispersed | |
Cla02g02264 | Cla-Chr2:37751304 | Cla08g01641 | Cla-Chr8:29034235 | 3.97E-114 | transposed | |
Cla05g02244 | Cla-Chr5:34097982 | Cla08g01641 | Cla-Chr8:29034235 | 9.75E-82 | transposed | |
Cla05g02656 | Cla-Chr5:37771031 | Cla08g01641 | Cla-Chr8:29034235 | 1.85E-172 | transposed | |
Cla06g01263 | Cla-Chr6:25861007 | Cla08g01641 | Cla-Chr8:29034235 | 9.61E-82 | transposed | |
Cla06g01334 | Cla-Chr6:26737601 | Cla08g01641 | Cla-Chr8:29034235 | 5.22E-120 | transposed | |
Cla07g01336 | Cla-Chr7:30575443 | Cla08g01641 | Cla-Chr8:29034235 | 5.96E-136 | transposed | |
Cla08g00891 | Cla-Chr8:21378801 | Cla08g01641 | Cla-Chr8:29034235 | 2.22E-06 | transposed | |
Cla09g00312 | Cla-Chr9:3021600 | Cla08g01641 | Cla-Chr8:29034235 | 1.08E-42 | transposed | |
Cla10g00737 | Cla-Chr10:12068184 | Cla08g01641 | Cla-Chr8:29034235 | 3.43E-104 | transposed | |
Cla10g01418 | Cla-Chr10:29236469 | Cla08g01641 | Cla-Chr8:29034235 | 1.20E-10 | transposed | |
Cla10g01504 | Cla-Chr10:30265620 | Cla08g01641 | Cla-Chr8:29034235 | 3.46E-41 | transposed | |
Cla11g00873 | Cla-Chr11:14128578 | Cla08g01641 | Cla-Chr8:29034235 | 1.00E-116 | transposed | |
Cla01g01741 | Cla-Chr1:32305915 | Cla08g01641 | Cla-Chr8:29034235 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61627 | PF00847 | AP2 | 1.60E-13 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01641 | K09285 | - | csv:101212797 | 1201.42 |