Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01642 ATGGGTGGTTCTACTTCTGGCTTTCAATGTGAAATAATGAACTGTTCTTTTGGAGTAAGCAGTCCTCAGCGATTGATTGGAGCTGACACTTCTTTTTCATCTACCTGTGGATCTTCTGCAACAACTCCTCCCTGTGAATTATCCAACTCTTTGGAGAATGAGAGAGTGAAAACCATATCCCACATTCTTCACGATCCTTCAACTTTGAGCTTTGATATGTTTGGAAGTGGGAACTTCTCAGAAATGGTGGGTTCTTTTGGCTTTCTAAATGAAGGTAACCACAGCCAGATCCCTAATATTAAGTGTCCATTTAGTTATGTGCCAAATCTGGATGAAGAAGAAACGGTCTGGCCAAAGAAAGATGTGAAGGCTTGCCTCGATTGCGTTAATGAAAATCAAAGAAAATTTGTTCTTGGTTCCAATTCTTCCAGCCCAAATAAGAATGCTGAAGATAACTTGGATGTAGAAGCAACTGAGATCCTTAATAAAGATGAGAAAACACTGAAAGTTGAGCATAGAATGAGTGCAAATTTTTACACCAAATCAGATAGTAAACAAGCCAAAGGAGGCTCTCAAAGTGTACAAGCTCCCCAGGAGAATTATATTCACGTTCAAGCGCGACGGGGCCGAGCTACTAATAACCATAGTCTCGCAGAAAGGACTCGATCGTGGCAGGTTAGAAGGGAAAAGATCAGTGAACGAATGAAGTTGCTGCAAGATCTTGTTCCTGGATGCAATCAGATTACCGGGAGAACCGTGGTGCTCGACGAAATTATTAACTATGTACAATCACTGCAACAACAGGTTGAGTTTCTATCGATGAAACTTGCAAATGTCGGTCCAGAATCAAGCTTGGATACGGAGCAAATTCTGCTCACAAATAACTCGTACATTTCGTCATCGAATATTCTTCGTACACGAGGCAAAGGCGTCGACAGCGTCCTTGCTATTGATCCTAGATTAACAACATCTCACACAATTCCTCATGTCATGTTTCAACTTCATGGAACAGTACCAACCATGCCAAAAACTACATCTCAGCAACTTTCTAGCCTTTCCAAAGTAAGTTCAAGATCTTCAAAAGAAACCATTTCTCTTTCCTTTTACAACGACATTATCGAATCCATTTACGTGCAGATGAAATGA 1146 40.75 MGGSTSGFQCEIMNCSFGVSSPQRLIGADTSFSSTCGSSATTPPCELSNSLENERVKTISHILHDPSTLSFDMFGSGNFSEMVGSFGFLNEGNHSQIPNIKCPFSYVPNLDEEETVWPKKDVKACLDCVNENQRKFVLGSNSSSPNKNAEDNLDVEATEILNKDEKTLKVEHRMSANFYTKSDSKQAKGGSQSVQAPQENYIHVQARRGRATNNHSLAERTRSWQVRREKISERMKLLQDLVPGCNQITGRTVVLDEIINYVQSLQQQVEFLSMKLANVGPESSLDTEQILLTNNSYISSSNILRTRGKGVDSVLAIDPRLTTSHTIPHVMFQLHGTVPTMPKTTSQQLSSLSKVSSRSSKETISLSFYNDIIESIYVQMK 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29047749 29049405 + ClCG08G016730.1 Cla08g01642 279297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01642 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 265 IPR011598 GO:0046983
Cla08g01642 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 278 IPR036638 GO:0046983
Cla08g01642 381 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 46 353 IPR024097 GO:0006355
Cla08g01642 381 CDD bHLH_AtBPE_like 200 290 - -
Cla08g01642 381 Gene3D - 207 284 IPR036638 GO:0046983
Cla08g01642 381 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 46 353 - -
Cla08g01642 381 SMART finulus 216 271 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01642 - - - bhj:120075945 545.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02655 Cla-Chr5:37753717 Cla08g01642 Cla-Chr8:29047749 6.75E-63 dispersed
Cla08g01642 Cla-Chr8:29047749 Cla09g00792 Cla-Chr9:8020731 2.32E-38 dispersed
Cla08g01642 Cla-Chr8:29047749 Cla02g00509 Cla-Chr2:5100515 2.44E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g606 Blo01g01485 . . . Bpe02g00466 . . Bma01g02229 . . . Cma09g00309 Car01g01375 . . Cpe06g00219 . Bhi04g00460 . . . . . . Cla08g01642 Cam08g2146 Cec08g1734 Cco08g1853 Clacu08g1834 . Cre08g1617 Cone4ag1634 . Cone17ag0902 Cone20ag0245 Lsi04g01455 Csa04g02505 . Cme03g02126 . . . . . . . . Sed11g1869 Cmo01g01823 . . . . Car09g00262 . Cpe02g00239 Bhi09g03191 Tan01g4661 Cmetu07g1171 . Hepe01g1851 Mch11g0386 . . . . . . . . Lsi08g01550 Csa02g01869 Chy07g00212 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014327 0 4 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 0 2 0 22