Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01645 ATGACCGACGACAATGGAAAACCGGATAAGGGTAATCAATGGCAATCGTCAAGACCACCAAACCAAGAGAAAGCGGAGGACATGAAACTCTGGGGAATTCTTCTTTTCGGTCTGATCGGTGCCTCTGCCACCACTCTCGCCTTTGACATAGGTTGTTTTGGGGGCAGGTTGGTCAGCTGCGGAGAACTGTTGATTGGGTATATACTCAGGTCACAATCATCATGGGGTGGAGGAAGTGGCCGTTCTTTCCGGTCATCATTTCAGGAGGAAGCATGGAAAAAGTATAATCGTAGGCTGCAAGAGGAGTATGAAGAAGAAATGGAAAGGGTGGAGCGCATAAGGCGCATGCAGAATGTATTCAACAGAGAGAGGAACAAATACAAGAGAGGCTACGAAAGCTGGAGAGAGAATGGCCCTGGTGCATATCATCAACATCACCAGCGAGATGATTGGTATTGGAAGGCTGAGACGTTCTACAGAGAGCAAAGTAACTCTAATAATTATAGGGAAACTCCAAGAGACAGACCAAGTTACTTGTTATCACATCATTATACAGTTTTGGGTCTCAACAGGTGTCGAAAAACACCTTATACCGATGCTGAGATCAAGACGGCATTCCAATCCAAGGCGAAGCAGTTTCATCCAGATCAGAACCAGGATAATAAAGAAGCTGCTGAGGCGAAGTTCAAAGAGGTGATGACATCTTATGAGGCCATAAAGTCAGAAAGAAAGAACAATAGAGCATAA 747 45.11 MTDDNGKPDKGNQWQSSRPPNQEKAEDMKLWGILLFGLIGASATTLAFDIGCFGGRLVSCGELLIGYILRSQSSWGGGSGRSFRSSFQEEAWKKYNRRLQEEYEEEMERVERIRRMQNVFNRERNKYKRGYESWRENGPGAYHQHHQRDDWYWKAETFYREQSNSNNYRETPRDRPSYLLSHHYTVLGLNRCRKTPYTDAEIKTAFQSKAKQFHPDQNQDNKEAAEAKFKEVMTSYEAIKSERKNNRA 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29080129 29083115 - ClCG08G016760.2 Cla08g01645 279300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01645 248 Gene3D DnaJ domain 180 248 IPR036869 -
Cla08g01645 248 CDD DnaJ 183 237 IPR001623 -
Cla08g01645 248 PRINTS DnaJ domain signature 206 221 IPR001623 -
Cla08g01645 248 PRINTS DnaJ domain signature 224 244 IPR001623 -
Cla08g01645 248 MobiDBLite consensus disorder prediction 7 21 - -
Cla08g01645 248 ProSiteProfiles dnaJ domain profile. 182 248 IPR001623 -
Cla08g01645 248 Pfam DnaJ domain 183 244 IPR001623 -
Cla08g01645 248 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 246 - -
Cla08g01645 248 Coils Coil 96 116 - -
Cla08g01645 248 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 246 - -
Cla08g01645 248 MobiDBLite consensus disorder prediction 1 22 - -
Cla08g01645 248 SMART dnaj_3 181 244 IPR001623 -
Cla08g01645 248 SUPERFAMILY Chaperone J-domain 178 244 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01645 - - - csv:101213280 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01645 Cla-Chr8:29080129 Cla04g00875 Cla-Chr4:23768911 1.56E-08 dispersed
Cla08g01645 Cla-Chr8:29080129 Cla09g00355 Cla-Chr9:3481990 8.38E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g601 . Blo12g01002 . Bda03g00156 . Bpe04g00138 . . Cmo05g00122 Cmo12g00554 . . . Car12g00558 . . Cpe07g00535 Bhi04g00466 . . . . . Lcy13g2158 Cla08g01645 . . . . . Cre08g1620 . Cone7ag1314 Cone17ag0906 Cone20ag0249 . . . Cme03g02129 . . . . . . . . . . . Cma12g00617 Cma05g00120 Car05g00102 . Cpe11g00104 . . . . . . . . . . . . . . . Lsi08g01553 Csa02g01866 Chy03g01619 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007061 3 2 2 0 2 0 2 0 0 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37