Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01650 | ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCCACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTTCATGATTTTCATTACCATTTAATCAGAGAGTTCCAAAATAATAATAATAATAATATCACTATTAATAATAATAATGTTGATTCAATCAAAGCCAAAATTCTTTCTCACTCTCTATTCTCTAACCTCCTCCAAGCTTTCTTGGATTGCCAAAACGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCAATGGCGTCCACCGAGGGCTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAAGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCGGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTGTCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCTTTTTACTTTGATGGCCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA | 1137 | 43.62 | MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVHDFHYHLIREFQNNNNNNITINNNNVDSIKAKILSHSLFSNLLQAFLDCQNVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQILASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFCHPNAAAAAAAAFYFDGHFMGDSHYRLGP | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29144261 | 29149705 | - | ClCG08G016810.2 | Cla08g01650 | 279305 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01650 | 378 | ProSiteProfiles | 'Homeobox' domain profile. | 274 | 337 | IPR001356 | GO:0003677 | |
Cla08g01650 | 378 | Gene3D | - | 271 | 344 | - | - | |
Cla08g01650 | 378 | ProSiteProfiles | ELK domain profile. | 254 | 274 | IPR005539 | GO:0003677 | |
Cla08g01650 | 378 | SMART | ELK_2 | 254 | 275 | IPR005539 | GO:0003677 | |
Cla08g01650 | 378 | SMART | ELK_2 | 166 | 186 | IPR005539 | GO:0003677 | |
Cla08g01650 | 378 | SMART | KNOX2_2 | 157 | 208 | IPR005541 | GO:0003677|GO:0005634 | |
Cla08g01650 | 378 | Pfam | KNOX2 domain | 164 | 207 | IPR005541 | GO:0003677|GO:0005634 | |
Cla08g01650 | 378 | SMART | HOX_1 | 276 | 341 | IPR001356 | GO:0003677 | |
Cla08g01650 | 378 | ProSitePatterns | 'Homeobox' domain signature. | 312 | 335 | IPR017970 | GO:0000981|GO:0006355 | |
Cla08g01650 | 378 | SMART | KNOX1_2 | 105 | 149 | IPR005540 | GO:0003677|GO:0005634 | |
Cla08g01650 | 378 | MobiDBLite | consensus disorder prediction | 218 | 249 | - | - | |
Cla08g01650 | 378 | Pfam | ELK domain | 254 | 275 | IPR005539 | GO:0003677 | |
Cla08g01650 | 378 | SUPERFAMILY | Homeodomain-like | 275 | 346 | IPR009057 | - | |
Cla08g01650 | 378 | MobiDBLite | consensus disorder prediction | 226 | 249 | - | - | |
Cla08g01650 | 378 | Pfam | Homeobox KN domain | 294 | 333 | IPR008422 | GO:0003677|GO:0006355 | |
Cla08g01650 | 378 | Pfam | KNOX1 domain | 107 | 148 | IPR005540 | GO:0003677|GO:0005634 | |
Cla08g01650 | 378 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 2 | 368 | - | - | |
Cla08g01650 | 378 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 368 | - | - | |
Cla08g01650 | 378 | CDD | homeodomain | 286 | 338 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla05g01810 | Cla08g01650 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02558 | Cla-Chr5:36873530 | Cla08g01650 | Cla-Chr8:29144261 | 2.65E-29 | dispersed | |
Cla06g01668 | Cla-Chr6:30261499 | Cla08g01650 | Cla-Chr8:29144261 | 4.78E-26 | dispersed | |
Cla08g01353 | Cla-Chr8:26339395 | Cla08g01650 | Cla-Chr8:29144261 | 2.00E-20 | dispersed | |
Cla08g01650 | Cla-Chr8:29144261 | Cla08g01740 | Cla-Chr8:29881590 | 1.20E-18 | dispersed | |
Cla05g01810 | Cla-Chr5:30014939 | Cla08g01650 | Cla-Chr8:29144261 | 1.44E-124 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61629 | PF03791 | KNOX2 | 3.10E-23 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01650 | - | - | csv:101219997 | 578.556 |