Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01650 ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCCACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTTCATGATTTTCATTACCATTTAATCAGAGAGTTCCAAAATAATAATAATAATAATATCACTATTAATAATAATAATGTTGATTCAATCAAAGCCAAAATTCTTTCTCACTCTCTATTCTCTAACCTCCTCCAAGCTTTCTTGGATTGCCAAAACGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCAATGGCGTCCACCGAGGGCTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAAGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCGGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTGTCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCTTTTTACTTTGATGGCCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA 1137 43.62 MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVHDFHYHLIREFQNNNNNNITINNNNVDSIKAKILSHSLFSNLLQAFLDCQNVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQILASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFCHPNAAAAAAAAFYFDGHFMGDSHYRLGP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29144261 29149705 - ClCG08G016810.2 Cla08g01650 279305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01650 378 ProSiteProfiles 'Homeobox' domain profile. 274 337 IPR001356 GO:0003677
Cla08g01650 378 Gene3D - 271 344 - -
Cla08g01650 378 ProSiteProfiles ELK domain profile. 254 274 IPR005539 GO:0003677
Cla08g01650 378 SMART ELK_2 254 275 IPR005539 GO:0003677
Cla08g01650 378 SMART ELK_2 166 186 IPR005539 GO:0003677
Cla08g01650 378 SMART KNOX2_2 157 208 IPR005541 GO:0003677|GO:0005634
Cla08g01650 378 Pfam KNOX2 domain 164 207 IPR005541 GO:0003677|GO:0005634
Cla08g01650 378 SMART HOX_1 276 341 IPR001356 GO:0003677
Cla08g01650 378 ProSitePatterns 'Homeobox' domain signature. 312 335 IPR017970 GO:0000981|GO:0006355
Cla08g01650 378 SMART KNOX1_2 105 149 IPR005540 GO:0003677|GO:0005634
Cla08g01650 378 MobiDBLite consensus disorder prediction 218 249 - -
Cla08g01650 378 Pfam ELK domain 254 275 IPR005539 GO:0003677
Cla08g01650 378 SUPERFAMILY Homeodomain-like 275 346 IPR009057 -
Cla08g01650 378 MobiDBLite consensus disorder prediction 226 249 - -
Cla08g01650 378 Pfam Homeobox KN domain 294 333 IPR008422 GO:0003677|GO:0006355
Cla08g01650 378 Pfam KNOX1 domain 107 148 IPR005540 GO:0003677|GO:0005634
Cla08g01650 378 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 2 368 - -
Cla08g01650 378 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 368 - -
Cla08g01650 378 CDD homeodomain 286 338 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla05g01810 Cla08g01650 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02558 Cla-Chr5:36873530 Cla08g01650 Cla-Chr8:29144261 2.65E-29 dispersed
Cla06g01668 Cla-Chr6:30261499 Cla08g01650 Cla-Chr8:29144261 4.78E-26 dispersed
Cla08g01353 Cla-Chr8:26339395 Cla08g01650 Cla-Chr8:29144261 2.00E-20 dispersed
Cla08g01650 Cla-Chr8:29144261 Cla08g01740 Cla-Chr8:29881590 1.20E-18 dispersed
Cla05g01810 Cla-Chr5:30014939 Cla08g01650 Cla-Chr8:29144261 1.44E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61629 PF03791 KNOX2 3.10E-23 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01650 - - csv:101219997 578.556