Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01666 ATGTTGAAGCTATTATCCTCATCTCACCGCATTTCCATCTTCATCTTCATCTTCCTCTGCTCTCCGCCGCTGCTTCCTTCCGCCGCTCTTCCCCTCTCCGACTCCGGTCATCAGCTTATCGCTAACGCTACCCTCCAGTCTAATAATGTATCCGTTCCGAGGAATAAGGAGGGCAGTTTTGCTGACATCATTGATCGTGCTTTGGAGAATGAATTCAAGGAGAATGACCAGAATGAAGCAATTGATGCAGGAAGCTTCAACAACAGTGTAGCGGAGCAGCAGGCAGTTCTGGAGACTGTGGCAAGGGTAAAGTCAAAGAAAAATGATACGAAAGAGGAAAAGTTTCAGCTTCAAAACGTTTTCAATTTGGACAGTGATAATAGAGCTGAAGACACTCCTACATTGATTGATCGAAAGGATAATGTCTTTATAATATCTAACTTCAAGTCTAAATATCCAGTGCTACAATTAGACTTGAGATTGATCTCTGATTTGGTAATCGTAATTGTCTCTGCAACTTGTGGTGGCATTGCCTTCGCATGTGCTGGACAACCAGTTATAACTGGATACCTTCTAGCAGGATCTATTATTGGACCTGGAGGATTTAACTTCGTCAGTGAAATGGTTCAAGTTGAAACGGTAGCTCAATTTGGTGTAATTTTTCTTCTTTTTGCACTGGGGTTGGAGTTTTCAACAGCTAAGCTTCGAGTTGTTCGTGCAGTTGCTGTTCTTGGTGGCCTGCTCCAAATTTTCCTGTTTATGTGCCTCAGTGGGATCACAGCCTCGGTGCTGAAGTTTTTGATGGAAAAGAACTCAACTAATGCTCTTCATGGACAAGTCACAATTGGCACCCTTATTCTGCAGGACTGTGCTGTTGGGTTACTGTTTGCTTTGCTTCCAGTACTAGGTGGGAATTCTGGTATTCTTCAAGGAGTAATATCCATGAGTAAAGTGTACGTTGGTGACCTTGGTTACTTTTTTGGTTGCTTTGTCAATTTTATCCCGTACATGTATTCCCTGGCTTTTAAAGTTGATGATAAGTCTATCATCACAGGTATGCTTTATTGCATTGATATATTTATTATTCTTGAAATTTATAAACCTGGTTTAACAACTGGACAAATGGAAGAAGTTCAGATGTATTTTCTAATTTATTTTTCTCTGCAGACCAATGAACTCTATCAATTAGCCTCTGTGGCGTTCTGCTTGCTCGTAGCATGGGTTGGTATCTACTTTCTTTTTCTGTGTGAGTTTGATTTTATGCATGCGAAGTGTAGTGATAAGTTGGGGCTGAGTCTAGAATTGGGTTCCTTTGCTGCTGGAGTGATGATATCGACAACTGATCTTGCTCAACACACACTTGAACAAATAGAGCCTATAAGGAACCTTTTTGCAGCCCTTTTTCTTGCCAGCATTGGAATGCTGATCCACGTTCAGTTTTTGTGGAACCATGTTGATATATTACTAGCAGCTGTTATACTGGTGATAATTGTAAAAACAATTGTAATTAGCACAGTGGTGAAGGGATTTGGGTATAACAACAGGACAGCACTCCTGGTTGGAATGTCTCTGGCTCAGATAGGAGAATTTGCTTTTGTTCTTCTCAGCCGCGCTTCTAATCTTCATCTAGTTGAGGGGAAACTGTATCTATTGCTTATTGGGACCACAGCCCTCAGTCTGGTGACAACTCCTTTTCTTTTCAAGCTGATACCTGCTGTAGTACATTTAGGCGTGCTATTGCGGTGGTTCTCTCCAGATAGTCTCGTCGAGATTGGATTCAAAGGAGATATCATCCGCTCAGACAGTGTAAAGCAGCGAGTTATGTTGATAGTACAGGGACCTCATGATTCATAA 1854 41.59 MLKLLSSSHRISIFIFIFLCSPPLLPSAALPLSDSGHQLIANATLQSNNVSVPRNKEGSFADIIDRALENEFKENDQNEAIDAGSFNNSVAEQQAVLETVARVKSKKNDTKEEKFQLQNVFNLDSDNRAEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAVLGGLLQIFLFMCLSGITASVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGILQGVISMSKVYVGDLGYFFGCFVNFIPYMYSLAFKVDDKSIITGMLYCIDIFIILEIYKPGLTTGQMEEVQMYFLIYFSLQTNELYQLASVAFCLLVAWVGIYFLFLCEFDFMHAKCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVQFLWNHVDILLAAVILVIIVKTIVISTVVKGFGYNNRTALLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLIGTTALSLVTTPFLFKLIPAVVHLGVLLRWFSPDSLVEIGFKGDIIRSDSVKQRVMLIVQGPHDS 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29306965 29315790 - ClCG08G016990.2 Cla08g01666 279321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01666 617 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 380 617 IPR045158 GO:0015386|GO:0071805|GO:1902600
Cla08g01666 617 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 260 322 IPR045158 GO:0015386|GO:0071805|GO:1902600
Cla08g01666 617 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 14 262 IPR045158 GO:0015386|GO:0071805|GO:1902600
Cla08g01666 617 Pfam Sodium/hydrogen exchanger family 166 264 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla08g01666 617 Pfam Sodium/hydrogen exchanger family 420 568 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla08g01666 617 PANTHER K(+) EFFLUX ANTIPORTER 6 380 617 - -
Cla08g01666 617 PANTHER K(+) EFFLUX ANTIPORTER 6 260 322 - -
Cla08g01666 617 PANTHER K(+) EFFLUX ANTIPORTER 6 14 262 - -
Cla08g01666 617 Gene3D - 380 575 IPR038770 -
Cla08g01666 617 Gene3D - 159 265 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01507 Cla-Chr3:30667795 Cla08g01666 Cla-Chr8:29306965 0 dispersed
Cla05g00817 Cla-Chr5:7965902 Cla08g01666 Cla-Chr8:29306965 0 dispersed
Cla08g01666 Cla-Chr8:29306965 Cla09g01607 Cla-Chr9:32211546 7.62E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01666 - - csv:101217282 895.96