Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01687 ATGGATATTACTGAGGTTGAAGAAAATCTATTTGCTGCAAGTGATGCCAAGTTTATTGTTTATTTACCCCTATATCGTTTTGTTAATCTATGGTGGTGTGTGGGGTTTCGTAAATACTTTTTAAGGGATCAGGAGCTGGTTGGAAGGGGAATCTCCCTTCAAAAACTACATGGAGGAATGTGCAAAACTCTCTCTGCAATATATTATAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATCCAGTCATTATGTTCATTGCATGTAGCACTAGAAAAAGCCAAGAACACTCTCCAACATTGTACAGAGAGTAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTCAAAGTTTGAGAAGGTAAAAAATGCTCTACAAGACAGCCTTAAACGTGTTGAAGATATTGTTCCCCAGTCAATTGGATATCAGGTTCAGGAGATTATGAAGGAACTGGCCAGTACTCAATTTTTCCTGGATCCTTTAGAGAAGCAAGTTGGTGACGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAGCAATGAGCTTGAGGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCGAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGACGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAACTCTCTCGAGGACAGTGGAGCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAGCACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCCAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGAGTTATCTGAATCAGAGTCTCTTAATTTGTCACCTGTGGACTCTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTCCCACTGGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATGTAGTGGATGACATTGACAACTCTGCTGAAGACCAAGAGTCCAATGTAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCCTAAATGAAGAAGCGGACTTGAAGAAAAAGTCCGCGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGGTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCCCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAGGAAATAATGTTGGCAGAACGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACGGCCCTCTATCTTAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTCCACGCTAATACCGAAACACTATGCAAACTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAAGCCCTTCTTTCAGCCCGTCGGGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTACTCCAGAGCTTATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAGCCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTATGCAATGGGAATGAGAGGTGCAGCGAGATGGTCCTACAGGAAGGCGTAATTCCCGGTTTGGTGTCGATGTCTGTGAACGGGACAGCAAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGGCGCCGCCACCAGCACCCACACCCACACTAACACCGACACCCATACCGACACCGACCGAACGATCAGAGAGTAGCGGGACATCTATGGCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACATCAAAAGCTTTTAGCTTTTTATGGAAAAGCAAAAGCTATTCGGTGTACCAATGCTAA 2463 43.44 MDITEVEENLFAASDAKFIVYLPLYRFVNLWWCVGFRKYFLRDQELVGRGISLQKLHGGMCKTLSAIYYKVLSIFPSLEAARPRSKSGIQSLCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLSKFEKVKNALQDSLKRVEDIVPQSIGYQVQEIMKELASTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDSNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQNSLEDSGAGGNGQAFERQLTKIGSFTLKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLELSESESLNLSPVDSVGSCKLKDVKVVPLDENCVTEEIKGNVVDDIDNSAEDQESNVNMLARYEQYLKVLNEEADLKKKSAVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERVISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQALLSARRDRTWTEKCIAILINLASSESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREAPPPAPTPTLTPTPIPTPTERSESSGTSMAVAESKPLCKSISRRKTSKAFSFLWKSKSYSVYQC 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29483155 29488123 + ClCG08G017210.2 Cla08g01687 279342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01687 820 MobiDBLite consensus disorder prediction 753 787 - -
Cla08g01687 820 MobiDBLite consensus disorder prediction 757 771 - -
Cla08g01687 820 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 1 763 - -
Cla08g01687 820 ProSiteProfiles U-box domain profile. 316 390 IPR003613 GO:0004842|GO:0016567
Cla08g01687 820 SUPERFAMILY ARM repeat 470 749 IPR016024 -
Cla08g01687 820 MobiDBLite consensus disorder prediction 772 787 - -
Cla08g01687 820 Pfam U-box domain 318 386 IPR003613 GO:0004842|GO:0016567
Cla08g01687 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 389 IPR013083 -
Cla08g01687 820 CDD RING-Ubox_PUB 321 363 IPR045210 -
Cla08g01687 820 MobiDBLite consensus disorder prediction 262 285 - -
Cla08g01687 820 SMART Ubox_2 320 383 IPR003613 GO:0004842|GO:0016567
Cla08g01687 820 Gene3D - 446 757 IPR011989 -
Cla08g01687 820 PANTHER U BOX DOMAIN-CONTAINING 1 763 - -
Cla08g01687 820 MobiDBLite consensus disorder prediction 260 288 - -
Cla08g01687 820 SUPERFAMILY RING/U-box 317 393 - -
Cla08g01687 820 Coils Coil 125 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01687 - - - csv:101220593 1365.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00810 Cla-Chr7:22575576 Cla08g01687 Cla-Chr8:29483155 5.86E-92 dispersed
Cla08g01687 Cla-Chr8:29483155 Cla11g01354 Cla-Chr11:27032664 0 dispersed
Cla08g01687 Cla-Chr8:29483155 Cla03g00152 Cla-Chr3:1576062 1.15E-53 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01473 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cla02g01224 . 213 810 U-box Gene Family AT2G23140 65.2 9.6e-120 427.9
Cla08g01687 . 1 818 U-box Gene Family AT1G24330 56.7 1.8e-237 819.3
Cla11g01354 . 209 1001 U-box Gene Family AT1G24330 54.3 1.3e-216 750.0
Cla08g01687 . 1 817 U-box Gene Family AT1G67530 56.6 2.2e-235 812.4
Cla11g01354 . 209 1002 U-box Gene Family AT1G67530 53.2 3.4e-212 735.3
Cla01g02188 . 1 362 U-box Gene Family AT4G21350 62.1 2.5e-120 429.1
Cla07g00206 . 135 460 U-box Gene Family AT3G07360 55.3 4.0e-82 302.0
Cla07g00605 CCT 312 499 U-box Gene Family AT1G71020 70.9 8.6e-73 271.6
Cla01g00596 CCT 1056 1255 U-box Gene Family AT1G71020 55.9 3.1e-54 209.9
Cla03g00152 CCT 263 432 U-box Gene Family AT1G71020 57.8 9.6e-48 188.3
Cla05g02163 . 279 444 U-box Gene Family AT1G71020 57.4 6.2e-47 185.7
Cla02g01975 CCT 255 425 U-box Gene Family AT1G71020 57.6 1.1e-46 184.9
Cla07g00605 CCT 63 703 U-box Gene Family AT1G23030 56.6 6.6e-110 395.2
Cla01g00596 CCT 881 1445 U-box Gene Family AT1G23030 53.3 2.1e-79 293.9
Cla02g01975 CCT 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cla03g00152 CCT 93 637 U-box Gene Family AT2G28830 58.3 1.6e-97 354.0
Cla03g00152 CCT 1 671 U-box Gene Family AT3G46510 66.6 5.0e-164 575.1
Cla02g01975 CCT 3 638 U-box Gene Family AT3G46510 66.3 5.9e-157 551.6
Cla05g02163 . 16 653 U-box Gene Family AT3G46510 56.1 1.0e-116 417.9
Cla05g02163 . 12 655 U-box Gene Family AT3G54850 65.6 3.6e-159 558.9
Cla02g01975 CCT 13 628 U-box Gene Family AT3G54850 57.3 2.4e-115 413.3
Cla03g00152 CCT 8 632 U-box Gene Family AT3G54850 55.0 1.7e-100 364.0
Cla02g00969 . 92 684 U-box Gene Family AT5G42340 60.0 2.1e-122 436.8
Cla04g00653 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cla03g00696 . 1 711 U-box Gene Family AT1G29340 68.1 3.4e-246 848.2
Cla05g01204 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cla04g00523 . 4 422 U-box Gene Family AT3G52450 52.4 3.2e-119 425.6
Cla10g01740 . 1 403 U-box Gene Family AT3G52450 50.7 2.4e-114 409.5
Cla10g01740 . 1 403 U-box Gene Family AT2G35930 55.6 4.7e-120 428.3
Cla04g00523 . 7 422 U-box Gene Family AT2G35930 51.4 3.7e-117 418.7
Cla05g01082 . 9 426 U-box Gene Family AT3G19380 64.1 3.6e-147 518.5
Cla05g01082 . 1 426 U-box Gene Family AT1G49780 64.3 1.1e-151 533.5
Cla01g01528 CCT 1 407 U-box Gene Family AT5G64660 54.2 2.6e-121 432.6
Cla01g01528 CCT 1 407 U-box Gene Family AT5G09800 51.3 6.6e-106 381.3
Cla05g02664 . 1 454 U-box Gene Family AT3G49810 62.6 2.1e-153 539.3
Cla08g01635 . 1 454 U-box Gene Family AT3G49810 61.9 9.6e-151 530.4
Cla08g01635 . 1 454 U-box Gene Family AT5G65920 62.8 4.7e-150 528.1
Cla05g02664 . 1 454 U-box Gene Family AT5G65920 61.3 2.9e-147 518.8
Cla05g00164 CCT 1 918 U-box Gene Family AT2G45910 50.3 8.7e-230 793.9
Cla11g00152 . 4 747 U-box Gene Family AT2G19410 50.6 6.7e-208 721.1
Cla01g00454 . 48 843 U-box Gene Family AT4G25160 50.7 1.0e-217 753.8
Cla06g01636 . 1 478 U-box Gene Family AT5G65200 50.1 2.9e-88 323.2
Cla09g01823 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cla06g01636 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cla01g01396 . 29 498 U-box Gene Family AT5G40140 52.1 2.9e-56 216.9
Cla08g00936 . 77 885 U-box Gene Family AT1G76390 61.2 4.1e-269 924.5
Cla08g00936 . 86 885 U-box Gene Family AT1G20780 61.7 4.8e-278 954.1
Cla08g01687 . 1 820 U-box Gene Family AT1G27910 59.6 1.4e-261 899.4
Cla11g01354 . 209 1013 U-box Gene Family AT1G27910 57.8 1.1e-247 853.2
Cla01g01716 . 394 985 U-box Gene Family AT5G67530 74.0 3.4e-260 894.4
Cla05g00226 . 77 207 U-box Gene Family AT5G67530 55.7 5.9e-39 159.5
Cla10g01783 . 12 150 U-box Gene Family AT5G67530 50.4 1.1e-37 155.2
Cla05g00413 . 48 530 U-box Gene Family AT1G04510 70.6 3.1e-193 671.8
Cla05g00413 . 48 504 U-box Gene Family AT2G33340 72.5 8.4e-193 670.2
Cla07g00205 . 10 278 U-box Gene Family AT3G07370 66.9 3.0e-102 368.6
Cla10g01473 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cla02g01224 . 213 810 U-box Gene Family AT2G23140 65.2 9.6e-120 427.9
Cla08g01687 . 1 818 U-box Gene Family AT1G24330 56.7 1.8e-237 819.3
Cla11g01354 . 209 1001 U-box Gene Family AT1G24330 54.3 1.3e-216 750.0
Cla08g01687 . 1 817 U-box Gene Family AT1G67530 56.6 2.2e-235 812.4
Cla11g01354 . 209 1002 U-box Gene Family AT1G67530 53.2 3.4e-212 735.3
Cla01g02188 . 1 362 U-box Gene Family AT4G21350 62.1 2.5e-120 429.1
Cla07g00206 . 135 460 U-box Gene Family AT3G07360 55.3 4.0e-82 302.0
Cla07g00605 CCT 312 499 U-box Gene Family AT1G71020 70.9 8.6e-73 271.6
Cla01g00596 CCT 1056 1255 U-box Gene Family AT1G71020 55.9 3.1e-54 209.9
Cla03g00152 CCT 263 432 U-box Gene Family AT1G71020 57.8 9.6e-48 188.3
Cla05g02163 . 279 444 U-box Gene Family AT1G71020 57.4 6.2e-47 185.7
Cla02g01975 CCT 255 425 U-box Gene Family AT1G71020 57.6 1.1e-46 184.9
Cla07g00605 CCT 63 703 U-box Gene Family AT1G23030 56.6 6.6e-110 395.2
Cla01g00596 CCT 881 1445 U-box Gene Family AT1G23030 53.3 2.1e-79 293.9
Cla02g01975 CCT 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cla03g00152 CCT 93 637 U-box Gene Family AT2G28830 58.3 1.6e-97 354.0
Cla03g00152 CCT 1 671 U-box Gene Family AT3G46510 66.6 5.0e-164 575.1
Cla02g01975 CCT 3 638 U-box Gene Family AT3G46510 66.3 5.9e-157 551.6
Cla05g02163 . 16 653 U-box Gene Family AT3G46510 56.1 1.0e-116 417.9
Cla05g02163 . 12 655 U-box Gene Family AT3G54850 65.6 3.6e-159 558.9
Cla02g01975 CCT 13 628 U-box Gene Family AT3G54850 57.3 2.4e-115 413.3
Cla03g00152 CCT 8 632 U-box Gene Family AT3G54850 55.0 1.7e-100 364.0
Cla02g00969 . 92 684 U-box Gene Family AT5G42340 60.0 2.1e-122 436.8
Cla04g00653 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cla03g00696 . 1 711 U-box Gene Family AT1G29340 68.1 3.4e-246 848.2
Cla05g01204 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cla04g00523 . 4 422 U-box Gene Family AT3G52450 52.4 3.2e-119 425.6
Cla10g01740 . 1 403 U-box Gene Family AT3G52450 50.7 2.4e-114 409.5
Cla10g01740 . 1 403 U-box Gene Family AT2G35930 55.6 4.7e-120 428.3
Cla04g00523 . 7 422 U-box Gene Family AT2G35930 51.4 3.7e-117 418.7
Cla05g01082 . 9 426 U-box Gene Family AT3G19380 64.1 3.6e-147 518.5
Cla05g01082 . 1 426 U-box Gene Family AT1G49780 64.3 1.1e-151 533.5
Cla01g01528 CCT 1 407 U-box Gene Family AT5G64660 54.2 2.6e-121 432.6
Cla01g01528 CCT 1 407 U-box Gene Family AT5G09800 51.3 6.6e-106 381.3
Cla05g02664 . 1 454 U-box Gene Family AT3G49810 62.6 2.1e-153 539.3
Cla08g01635 . 1 454 U-box Gene Family AT3G49810 61.9 9.6e-151 530.4
Cla08g01635 . 1 454 U-box Gene Family AT5G65920 62.8 4.7e-150 528.1
Cla05g02664 . 1 454 U-box Gene Family AT5G65920 61.3 2.9e-147 518.8
Cla05g00164 CCT 1 918 U-box Gene Family AT2G45910 50.3 8.7e-230 793.9
Cla11g00152 . 4 747 U-box Gene Family AT2G19410 50.6 6.7e-208 721.1
Cla01g00454 . 48 843 U-box Gene Family AT4G25160 50.7 1.0e-217 753.8
Cla06g01636 . 1 478 U-box Gene Family AT5G65200 50.1 2.9e-88 323.2
Cla09g01823 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cla06g01636 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cla01g01396 . 29 498 U-box Gene Family AT5G40140 52.1 2.9e-56 216.9
Cla08g00936 . 77 885 U-box Gene Family AT1G76390 61.2 4.1e-269 924.5
Cla08g00936 . 86 885 U-box Gene Family AT1G20780 61.7 4.8e-278 954.1
Cla08g01687 . 1 820 U-box Gene Family AT1G27910 59.6 1.4e-261 899.4
Cla11g01354 . 209 1013 U-box Gene Family AT1G27910 57.8 1.1e-247 853.2
Cla01g01716 . 394 985 U-box Gene Family AT5G67530 74.0 3.4e-260 894.4
Cla05g00226 . 77 207 U-box Gene Family AT5G67530 55.7 5.9e-39 159.5
Cla10g01783 . 12 150 U-box Gene Family AT5G67530 50.4 1.1e-37 155.2
Cla05g00413 . 48 530 U-box Gene Family AT1G04510 70.6 3.1e-193 671.8
Cla05g00413 . 48 504 U-box Gene Family AT2G33340 72.5 8.4e-193 670.2
Cla07g00205 . 10 278 U-box Gene Family AT3G07370 66.9 3.0e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003521 0 9 3 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 48