Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g01699 | ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCACAGCCACAGCAGACTCATCAGCAGCACCAAATGATGCTTGGTGACAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCCAAGAAGCGAGCGGAGACTTGGGTTCAGGATGAGACTCGAAGCTTAATTGCCCTACGCCGGGAGATGGATGGCTTGTTTAATACTTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGATTTGATCGCTCCCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTCAAGGAGTTCAAGAAAGCAAAGCACCATGACAGGGGAAGTGGCTCTGCTAAGATGTCGTGTTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGTCCCACGCCACCCAAGATTGATTCATATATGCAATTCTCAGACAAAGGAATAGAGGATAATGGTCTATCGTTCGGACCTGTTGAAGCAGGTGGCAGACCTTCACTCAATCTTGAAAGACAACTAGATCATGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACGGGCATTCCACCTTGGAATTGGAGGGAGGCATCAGGAAATGGTAGTACTGTGGAACCACAATTTGACGTGTTTGAATGTTTTGGAAAAGAATCCTATTGTGGGGAGAGTCAAGCATTTGGCGGGAGAGTAATATCAGTGAAGTGGGGGGACTACACAAGAAGAATTGGTGTTGATGGCACCTCAGAGGCAATCAAGGAGGCAATCAAGTCTGCATTCAGATTGAGAACCAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGTACGTCGTTCTGTGTTTGTGTGGCTGTTAAAATCTGCCTATATGATGAATCTGACCACTTACCGGTACATACTGAAGACAAAGTTTTTTACATTGAAGAAGATTACCGAGATTTTTTAGCTCGTCGAGGCTGGACATGCCTTCGGGAGTTTGATGGGTATAGAAACATCGATAATATGGATGACCTCCGTCCTGGTGCAATATACCGTGGTATAAGTTGA | 1224 | 46.08 | MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQFSDKGIEDNGLSFGPVEAGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREASGNGSTVEPQFDVFECFGKESYCGESQAFGGRVISVKWGDYTRRIGVDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGTSFCVCVAVKICLYDESDHLPVHTEDKVFYIEEDYRDFLARRGWTCLREFDGYRNIDNMDDLRPGAIYRGIS | 407 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 29590562 | 29594611 | - | ClCG08G017350.2 | Cla08g01699 | 279354 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g01699 | 407 | ProSiteProfiles | Myb-like domain profile. | 65 | 129 | IPR001005 | - | |
| Cla08g01699 | 407 | MobiDBLite | consensus disorder prediction | 32 | 54 | - | - | |
| Cla08g01699 | 407 | Gene3D | - | 73 | 135 | - | - | |
| Cla08g01699 | 407 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-4 | 5 | 406 | - | - | |
| Cla08g01699 | 407 | Pfam | Myb/SANT-like DNA-binding domain | 72 | 156 | IPR044822 | - | |
| Cla08g01699 | 407 | MobiDBLite | consensus disorder prediction | 55 | 71 | - | - | |
| Cla08g01699 | 407 | CDD | GT1 | 71 | 136 | - | - | |
| Cla08g01699 | 407 | MobiDBLite | consensus disorder prediction | 26 | 71 | - | - | |
| Cla08g01699 | 407 | PANTHER | - | 5 | 406 | - | - | |
| Cla08g01699 | 407 | SMART | sant | 69 | 131 | IPR001005 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g01074 | Cla-Chr7:27342323 | Cla08g01699 | Cla-Chr8:29590562 | 4.89E-07 | dispersed | |
| Cla08g01699 | Cla-Chr8:29590562 | Cla10g02096 | Cla-Chr10:36676511 | 8.32E-11 | dispersed | |
| Cla01g01063 | Cla-Chr1:16710990 | Cla08g01699 | Cla-Chr8:29590562 | 3.30E-09 | transposed | |
| Cla02g00074 | Cla-Chr2:739567 | Cla08g01699 | Cla-Chr8:29590562 | 1.49E-07 | transposed | |
| Cla06g01733 | Cla-Chr6:30884184 | Cla08g01699 | Cla-Chr8:29590562 | 7.74E-07 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61635 | PF13837 | Myb_DNA-bind_4 | 2.10E-20 | CL0123 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g01699 | - | - | csv:101222888 | 706.827 |