Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01708 ATGTATTATCAGCTAGCGAGGTCTTCTTGCAAGGATTCTCTGAAGGTCCTGGAAGAAGATGTACAGCGCGCCAATGCTTTGTTTATGAACATGGTTGATTTGATGAGCTGTGAGTGGGGATGTTTATATGATCTGTGTTTGTCTGATTTTCCCAATTTTGGGTTCTGGGTTTGCAGGGCTGCTGCAATTCCAAGAGCCAAACATGGTTCCTATCTTCAAATGAAGTTGGTTTACACTGATGGAAGACCTAATATATCAGCACATGGAAGAAAGGCAACTGTCAAGGATTTTTATGCTGTCATATTGCCATCCCTTCAACGGCTCCAAGCGAACGCCGAGGAGTTTGACAATGCTAAAGAGAAGTGTGTCAAGTCCGACAAGTCTAGTGAGAGAAGAGTCCAAGGAGATGGAAAACTCTCCAATGGTGATTTGGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCAACAAAAATGGTGTTGCCAAACTGCTGCCATTCCATGTGCATTAAATGTTACCACAATTGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGAGGAAGCTTGAAGAGGATCAAATCAGAGGACTTATGGGTGCTAACTTGCAATGAGGATGTGGTTGATGCTGAAAAGCCCAACTCTGAAAGGCATTTTCACCAGGCTTTAAGCTGCCATGGCTATCCCAATGGAGCTATGGAGGGGCATTTTCCATATATAGTAAAGACTACAAAAGTACAAAAAGTGGCTGGAGCTGGTAGCCTAAGGCTATATAGGCCTTTGCCTTTGCCTTTGTCATTGATAGCTGATGATGGGGGAGAAAGCTCCATCCTCATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGTGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGACGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACATACAGATTTGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTTCGTAGCTCATTAGCCGTGCCACAAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCGTCCATTAGTTCTGGACGATCAGCAACGGAGAAAGATATAGCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTGTAGCCAACAAATGGTCCATTTAAATCTACCGAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 2592 42.44 MYYQLARSSCKDSLKVLEEDVQRANALFMNMVDLMSCEWGCLYDLCLSDFPNFGFWVCRAAAIPRAKHGSYLQMKLVYTDGRPNISAHGRKATVKDFYAVILPSLQRLQANAEEFDNAKEKCVKSDKSSERRVQGDGKLSNGDLEREDECGICLEPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKPNSERHFHQALSCHGYPNGAMEGHFPYIVKTTKVQKVAGAGSLRLYRPLPLPLSLIADDGGESSILMENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDLCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIANSIESKPPYSEDCSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29657849 29670292 - ClCG08G017460.2 Cla08g01708 279363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01708 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 198 IPR013083 -
Cla08g01708 863 Gene3D - 296 448 - -
Cla08g01708 863 Gene3D - 473 536 - -
Cla08g01708 863 Pfam Myb-like DNA-binding domain 479 529 IPR001005 -
Cla08g01708 863 SUPERFAMILY Homeodomain-like 475 534 IPR009057 -
Cla08g01708 863 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 477 530 IPR006447 GO:0003677
Cla08g01708 863 Pfam Ring finger domain 148 188 IPR001841 -
Cla08g01708 863 CDD REC_typeB_ARR-like 298 412 - -
Cla08g01708 863 SMART ring_2 150 187 IPR001841 -
Cla08g01708 863 ProSiteProfiles Response regulatory domain profile. 297 412 IPR001789 GO:0000160
Cla08g01708 863 PANTHER TWO-COMPONENT RESPONSE REGULATOR 281 768 IPR045279 GO:0009736
Cla08g01708 863 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
Cla08g01708 863 SUPERFAMILY RING/U-box 143 194 - -
Cla08g01708 863 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
Cla08g01708 863 SUPERFAMILY CheY-like 295 420 IPR011006 -
Cla08g01708 863 Pfam Response regulator receiver domain 298 407 IPR001789 GO:0000160
Cla08g01708 863 Coils Coil 105 125 - -
Cla08g01708 863 PANTHER TWO-COMPONENT RESPONSE REGULATOR 281 768 - -
Cla08g01708 863 SMART REC_2 296 408 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00325 Cla-Chr3:3851220 Cla08g01708 Cla-Chr8:29657849 1.36E-48 dispersed
Cla08g01708 Cla-Chr8:29657849 Cla11g00324 Cla-Chr11:3670474 1.82E-72 dispersed
Cla10g01535 Cla-Chr10:30671838 Cla08g01708 Cla-Chr8:29657849 3.18E-13 dispersed
Cla05g02627 Cla-Chr5:37465029 Cla08g01708 Cla-Chr8:29657849 2.33E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61636 PF00072 Response_reg 2.10E-24 CL0304 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01708 - K14491 csv:101204370 1117.06