Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01708 | ATGTATTATCAGCTAGCGAGGTCTTCTTGCAAGGATTCTCTGAAGGTCCTGGAAGAAGATGTACAGCGCGCCAATGCTTTGTTTATGAACATGGTTGATTTGATGAGCTGTGAGTGGGGATGTTTATATGATCTGTGTTTGTCTGATTTTCCCAATTTTGGGTTCTGGGTTTGCAGGGCTGCTGCAATTCCAAGAGCCAAACATGGTTCCTATCTTCAAATGAAGTTGGTTTACACTGATGGAAGACCTAATATATCAGCACATGGAAGAAAGGCAACTGTCAAGGATTTTTATGCTGTCATATTGCCATCCCTTCAACGGCTCCAAGCGAACGCCGAGGAGTTTGACAATGCTAAAGAGAAGTGTGTCAAGTCCGACAAGTCTAGTGAGAGAAGAGTCCAAGGAGATGGAAAACTCTCCAATGGTGATTTGGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCAACAAAAATGGTGTTGCCAAACTGCTGCCATTCCATGTGCATTAAATGTTACCACAATTGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGAGGAAGCTTGAAGAGGATCAAATCAGAGGACTTATGGGTGCTAACTTGCAATGAGGATGTGGTTGATGCTGAAAAGCCCAACTCTGAAAGGCATTTTCACCAGGCTTTAAGCTGCCATGGCTATCCCAATGGAGCTATGGAGGGGCATTTTCCATATATAGTAAAGACTACAAAAGTACAAAAAGTGGCTGGAGCTGGTAGCCTAAGGCTATATAGGCCTTTGCCTTTGCCTTTGTCATTGATAGCTGATGATGGGGGAGAAAGCTCCATCCTCATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGTGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGACGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGTGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACATACAGATTTGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTTCGTAGCTCATTAGCCGTGCCACAAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCGTCCATTAGTTCTGGACGATCAGCAACGGAGAAAGATATAGCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTGTAGCCAACAAATGGTCCATTTAAATCTACCGAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA | 2592 | 42.44 | MYYQLARSSCKDSLKVLEEDVQRANALFMNMVDLMSCEWGCLYDLCLSDFPNFGFWVCRAAAIPRAKHGSYLQMKLVYTDGRPNISAHGRKATVKDFYAVILPSLQRLQANAEEFDNAKEKCVKSDKSSERRVQGDGKLSNGDLEREDECGICLEPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKPNSERHFHQALSCHGYPNGAMEGHFPYIVKTTKVQKVAGAGSLRLYRPLPLPLSLIADDGGESSILMENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDLCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIANSIESKPPYSEDCSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA | 863 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29657849 | 29670292 | - | ClCG08G017460.2 | Cla08g01708 | 279363 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01708 | 863 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 198 | IPR013083 | - | |
Cla08g01708 | 863 | Gene3D | - | 296 | 448 | - | - | |
Cla08g01708 | 863 | Gene3D | - | 473 | 536 | - | - | |
Cla08g01708 | 863 | Pfam | Myb-like DNA-binding domain | 479 | 529 | IPR001005 | - | |
Cla08g01708 | 863 | SUPERFAMILY | Homeodomain-like | 475 | 534 | IPR009057 | - | |
Cla08g01708 | 863 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 477 | 530 | IPR006447 | GO:0003677 | |
Cla08g01708 | 863 | Pfam | Ring finger domain | 148 | 188 | IPR001841 | - | |
Cla08g01708 | 863 | CDD | REC_typeB_ARR-like | 298 | 412 | - | - | |
Cla08g01708 | 863 | SMART | ring_2 | 150 | 187 | IPR001841 | - | |
Cla08g01708 | 863 | ProSiteProfiles | Response regulatory domain profile. | 297 | 412 | IPR001789 | GO:0000160 | |
Cla08g01708 | 863 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 281 | 768 | IPR045279 | GO:0009736 | |
Cla08g01708 | 863 | ProSiteProfiles | Zinc finger RING-type profile. | 150 | 188 | IPR001841 | - | |
Cla08g01708 | 863 | SUPERFAMILY | RING/U-box | 143 | 194 | - | - | |
Cla08g01708 | 863 | ProSitePatterns | Zinc finger RING-type signature. | 165 | 174 | IPR017907 | - | |
Cla08g01708 | 863 | SUPERFAMILY | CheY-like | 295 | 420 | IPR011006 | - | |
Cla08g01708 | 863 | Pfam | Response regulator receiver domain | 298 | 407 | IPR001789 | GO:0000160 | |
Cla08g01708 | 863 | Coils | Coil | 105 | 125 | - | - | |
Cla08g01708 | 863 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 281 | 768 | - | - | |
Cla08g01708 | 863 | SMART | REC_2 | 296 | 408 | IPR001789 | GO:0000160 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g00325 | Cla-Chr3:3851220 | Cla08g01708 | Cla-Chr8:29657849 | 1.36E-48 | dispersed | |
Cla08g01708 | Cla-Chr8:29657849 | Cla11g00324 | Cla-Chr11:3670474 | 1.82E-72 | dispersed | |
Cla10g01535 | Cla-Chr10:30671838 | Cla08g01708 | Cla-Chr8:29657849 | 3.18E-13 | dispersed | |
Cla05g02627 | Cla-Chr5:37465029 | Cla08g01708 | Cla-Chr8:29657849 | 2.33E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61636 | PF00072 | Response_reg | 2.10E-24 | CL0304 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01708 | - | K14491 | csv:101204370 | 1117.06 |