Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01713 ATGGCTTCCATATCACCTTACCGCCCAAACTTTGTGTTCTCTTCATTTCCGACCCGTGTTCCGAACTCAAACCCTCTATTTCATGGAGTTCGATTCCGAGGTTTATCCCACCATAAGCCTTTCCTTCGCGGTTCCCTTGCTGTGGCGAGATTTGGGTTTAAACCCGAGTTCTTGCCTGACCCGGATAACGCCGAGGGCTTTGTTAGAGAGTTCTTTGGCAAAGCTGAGAGCGTTCTTTACACGATTGCCGACGCCGCCGTGTCTGCTTCGCCGGAGAATGTTACCACCGCCAAGCAGACTGACGATTGGTTTACGGGGATTACCAATTATATGGAGAGCGTCCTTAAAATTCTTAAGGATGGACTTTCTACTCTACATGTTCCTTATGCCTATGGTTTTGCTATTATACTCCTTACAGTTCTTGTTAAGGCTGCTACGTTTCCTTTAACAAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCACAAGTGAAGGCTGTTCAACAACGCTATGCTGGGGATCAGGAGAGGATTCAACTTGAGACTGCTAGACTGTACAAATTAGCTGGCATAAACCCATTGGCAGGATGCCTACCCACGTTGGCAACAATTCCTGTATGGATTGGACTATACAGGGCTCTTTCAAATGTGGCCAACGAGGGTCTCCTCACGGAAGGTTTTTTCTGGATACCCTCTCTAGCTGGTCCAACTACGATTGCCTCCCGACAAAATGGGAGTGATACCTTTGCGTATCTTGTCTTGCCTGTGTTGCTGGTCGTTTCGCAGTACATCTCTGTTCAAATTATGCAATCATCGCAGACTAATGATCCAAGCATGAAGAGTTCTCAAGCGATAACGAAGTTCCTACCATTAATGATTGGATATTTTGCACTTTCAGTTCCTTCTGGTCTAATTTGGCAAAACTCTTATATCTCTCAGATGTTACTCAGGCTTACTAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTTAGGTGGTGCCAAAACCCCCGACAAACAGTTCATTGATGAAATCATCAAACAAGAACAAGAACTAGCCCGTGTCCAGAGCGAAGCGCCCAAGTTAAACTCAATCTCAAGTAGCACAGTAGCCCGACAAGAAGAGAAGCTGACAGCAGAAGGGCTAAAGCCTGGTGAAAGGTTAGAACTTAAAAGTCATTTCTTACCAAAATCAAGTGTCAGGTTTTGTTATAACTATGTGGTTTTTGATGTGTTGATAATCTCCAGATTTAAACAGTTGAAGGAGCAAGAGGCTAGGTTAAGACAGCTAGAAGAAGAAAAAAGGAAAGCTGAAAAGGTAGCCAAGGTTGAATCTCTGACAATAAATGACAGTGACAAGAGTGCAACTGTTGGAGTTGTTGTCAATGGCAGTCTTTCTAGGCAGGATGTAAAGGAGGATCGGAACTCCATTCCCACGACTTCTAGACAAAGAACTGATGTGGACAACGAGCCAAGTGCAACTCAAGGAGAGGGAGTACTCGAGACATACACCAGGGTGGCCAAGGATGCCAAACTAAACGGAGAAGAACAAAGAGAGTAA 1578 44.87 MASISPYRPNFVFSSFPTRVPNSNPLFHGVRFRGLSHHKPFLRGSLAVARFGFKPEFLPDPDNAEGFVREFFGKAESVLYTIADAAVSASPENVTTAKQTDDWFTGITNYMESVLKILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSDTFAYLVLPVLLVVSQYISVQIMQSSQTNDPSMKSSQAITKFLPLMIGYFALSVPSGLIWQNSYISQMLLRLTNNILSTAQQAWLQKLGGAKTPDKQFIDEIIKQEQELARVQSEAPKLNSISSSTVARQEEKLTAEGLKPGERLELKSHFLPKSSVRFCYNYVVFDVLIISRFKQLKEQEARLRQLEEEKRKAEKVAKVESLTINDSDKSATVGVVVNGSLSRQDVKEDRNSIPTTSRQRTDVDNEPSATQGEGVLETYTRVAKDAKLNGEEQRE 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29692859 29698317 + ClCG08G017520.2 Cla08g01713 279368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01713 525 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 131 335 IPR028055 -
Cla08g01713 525 PANTHER BNAA09G28180D PROTEIN 249 396 - -
Cla08g01713 525 PANTHER BNAA09G28180D PROTEIN 47 249 - -
Cla08g01713 525 PANTHER OXA1 249 396 IPR001708 GO:0016021|GO:0032977
Cla08g01713 525 PANTHER OXA1 47 249 IPR001708 GO:0016021|GO:0032977
Cla08g01713 525 Coils Coil 419 453 - -
Cla08g01713 525 MobiDBLite consensus disorder prediction 486 505 - -
Cla08g01713 525 Pfam 60Kd inner membrane protein 131 335 IPR001708 GO:0016021|GO:0032977
Cla08g01713 525 MobiDBLite consensus disorder prediction 473 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00157 Cla-Chr3:1644480 Cla08g01713 Cla-Chr8:29692859 1.68E-34 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01713 K03217 - csv:101205346 820.076