Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01714 ATGAAGATCACGATGAAGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTGTCCTGCGGAACCGGGAACCCAATAGACGACTGTTGGCGGTGTGATCCCAATTGGGAGAAGAACCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGAGAGCCATCGGTGGCAAAAACGGCAAATTCTACATTGTCACTGACCCCTCCGATAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGTCGCGGCGCGTCCGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGACGGGGTTTCCATATTTGGGGGCAGCCATATTTGGGTGGACCATTGCTCTTTGTCCAATTGTCGAGATGGGCTAATTGATGCGATTCATGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACATAGTGATTCCTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTACAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGGAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAAAGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTTAGTTCGATGACGGCAAAAGCGGGGGTGCTTTCCTGCCGAAAAGGCTCCCGGTGTTAG 1125 47.91 MKITMKSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29708349 29710497 + ClCG08G017530.1 Cla08g01714 279369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01714 374 SUPERFAMILY Pectin lyase-like 13 368 IPR011050 -
Cla08g01714 374 PANTHER PECTATE LYASE 18-RELATED 10 371 IPR045032 GO:0030570
Cla08g01714 374 Gene3D - 25 367 IPR012334 -
Cla08g01714 374 PRINTS Pollen allergen Amb family signature 72 97 IPR018082 -
Cla08g01714 374 PRINTS Pollen allergen Amb family signature 48 65 IPR018082 -
Cla08g01714 374 PRINTS Pollen allergen Amb family signature 108 124 IPR018082 -
Cla08g01714 374 PRINTS Pollen allergen Amb family signature 345 368 IPR018082 -
Cla08g01714 374 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Cla08g01714 374 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Cla08g01714 374 PRINTS Pollen allergen Amb family signature 172 193 IPR018082 -
Cla08g01714 374 PRINTS Pollen allergen Amb family signature 316 340 IPR018082 -
Cla08g01714 374 PANTHER PECTATE LYASE 10 371 - -
Cla08g01714 374 SMART amb_all 100 297 IPR002022 -
Cla08g01714 374 Pfam Pectate lyase 111 289 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01714 Cla-Chr8:29708349 Cla09g01903 Cla-Chr9:36705078 0 dispersed
Cla08g01714 Cla-Chr8:29708349 Cla05g00372 Cla-Chr5:3399550 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01714 K01728 - csv:101208076 699.508