Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g01714 | ATGAAGATCACGATGAAGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTGTCCTGCGGAACCGGGAACCCAATAGACGACTGTTGGCGGTGTGATCCCAATTGGGAGAAGAACCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGAGAGCCATCGGTGGCAAAAACGGCAAATTCTACATTGTCACTGACCCCTCCGATAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGTCGCGGCGCGTCCGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGACGGGGTTTCCATATTTGGGGGCAGCCATATTTGGGTGGACCATTGCTCTTTGTCCAATTGTCGAGATGGGCTAATTGATGCGATTCATGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACATAGTGATTCCTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTACAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGGAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAAAGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTTAGTTCGATGACGGCAAAAGCGGGGGTGCTTTCCTGCCGAAAAGGCTCCCGGTGTTAG | 1125 | 47.91 | MKITMKSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29708349 | 29710497 | + | ClCG08G017530.1 | Cla08g01714 | 279369 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g01714 | 374 | SUPERFAMILY | Pectin lyase-like | 13 | 368 | IPR011050 | - | |
Cla08g01714 | 374 | PANTHER | PECTATE LYASE 18-RELATED | 10 | 371 | IPR045032 | GO:0030570 | |
Cla08g01714 | 374 | Gene3D | - | 25 | 367 | IPR012334 | - | |
Cla08g01714 | 374 | PRINTS | Pollen allergen Amb family signature | 72 | 97 | IPR018082 | - | |
Cla08g01714 | 374 | PRINTS | Pollen allergen Amb family signature | 48 | 65 | IPR018082 | - | |
Cla08g01714 | 374 | PRINTS | Pollen allergen Amb family signature | 108 | 124 | IPR018082 | - | |
Cla08g01714 | 374 | PRINTS | Pollen allergen Amb family signature | 345 | 368 | IPR018082 | - | |
Cla08g01714 | 374 | PRINTS | Pollen allergen Amb family signature | 252 | 271 | IPR018082 | - | |
Cla08g01714 | 374 | PRINTS | Pollen allergen Amb family signature | 274 | 293 | IPR018082 | - | |
Cla08g01714 | 374 | PRINTS | Pollen allergen Amb family signature | 172 | 193 | IPR018082 | - | |
Cla08g01714 | 374 | PRINTS | Pollen allergen Amb family signature | 316 | 340 | IPR018082 | - | |
Cla08g01714 | 374 | PANTHER | PECTATE LYASE | 10 | 371 | - | - | |
Cla08g01714 | 374 | SMART | amb_all | 100 | 297 | IPR002022 | - | |
Cla08g01714 | 374 | Pfam | Pectate lyase | 111 | 289 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g01714 | Cla-Chr8:29708349 | Cla09g01903 | Cla-Chr9:36705078 | 0 | dispersed | |
Cla08g01714 | Cla-Chr8:29708349 | Cla05g00372 | Cla-Chr5:3399550 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g01714 | K01728 | - | csv:101208076 | 699.508 |