Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g01742 ATGGAACCACCTTTTCTGTTATGGAAACCGGTTTTTGTAGTTTTGGCACTCTTGGAACTTGCTTTTGCTACGCTATCTCCTTCTGGTGTGAACTACGAAGTTGTAGCTTTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTTTTGGAGAACTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGTTCTCCAGATGGATATGTTTCAGCTTTGGGGCTACCTAGCCAGAGTTTGTCCGGGGTCTTATCACCGGGGATTGGAAATCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAACGTATTTAGTGGCCAAATACCCAGCTCCCTCGGAGACTTGAAGAAGCTGAACTATTTGCGACTGAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTCGTAATTGTTGGTAACCCTCTGATCTGTGGTCCAAGCAACTGTTCTGCTATCTTTCCAGAGCCATTGTCGTTTGCCCCAGATACTCTTGAAGGTGTGGGAAATTTGGGGTTTGGTAAGAGCCACCGCAAGGCAATTGCCTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGAGGTACGTTTGGGCCATTTGAGAAGGTACACATTCAAGGAACTTAGGGCAGCAACCGATCACTTCAACTCAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTTTGGTAGCGGTCAAAAGGTTGAAGGATTATAACACTGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACACCGAAATCTTCTCAAGCTTTTTGGCTTCTGTTCTACTGAGAGCGAAAGACTTCTGGTTTACCCATTCATGCCCAATGGCAGCGTTGCATCTCGGTTAAGAGGTTTGTTGCTTGCAAGCATTGTGGTTCCATATAGCTTGATGAGGCTGTTTACTTGGATATTTAATACCTGCAAGTTTCATAGTATTGTTAGCAGTAATCCCCAGTTACAAAATGATGCTAAACTGGAAGGTTTCAAGAATTCTAAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCATGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCCAAAATTATTCATCGGGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCTGTCGTTGGAGACTTTGGGTTGGCCAAACTTTTGGATCACAGGGATTCTCATGTGACTACGGCGGTGCGTGGCACTGTTGGGCATATTGCCCCAGAATACTTATCAACAGGCCAATCATCAGAAAAGACTGATGTTTTCGGGTTTGGAATCTTGCTTTTGGAGTTAATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTCGATTGGGTGAAAAAGTTGCATCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAGGCAAGTTTGACAGAGTTGAGTTAGAGGAAATTGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGGCCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGTTTAGCTGAGAAATGGGAAGCATCACAGCACATTGAAACGCCAAGATACCGACCGTGCGAGAATCCCCCTCAACGGTACTCAGATTATATAGAAGAATCTTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1926 44.39 MEPPFLLWKPVFVVLALLELAFATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFSGQIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVIVGNPLICGPSNCSAIFPEPLSFAPDTLEGVGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLKLFGFCSTESERLLVYPFMPNGSVASRLRGLLLASIVVPYSLMRLFTWIFNTCKFHSIVSSNPQLQNDAKLEGFKNSKPALDWAMRKRIAMGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNMMVDKDLRGKFDRVELEEIVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHIETPRYRPCENPPQRYSDYIEESSLIVEAMELSGPR 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29908666 29913029 - ClCG08G017850.1 Cla08g01742 279397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g01742 641 SUPERFAMILY L domain-like 31 185 - -
Cla08g01742 641 PANTHER PROTEIN NSP-INTERACTING KINASE 3 396 641 - -
Cla08g01742 641 Gene3D Transferase(Phosphotransferase) domain 1 400 610 - -
Cla08g01742 641 Gene3D Phosphorylase Kinase; domain 1 247 351 - -
Cla08g01742 641 ProSitePatterns Protein kinases ATP-binding region signature. 281 303 IPR017441 GO:0005524
Cla08g01742 641 Gene3D Ribonuclease Inhibitor 29 192 IPR032675 -
Cla08g01742 641 SUPERFAMILY Protein kinase-like (PK-like) 259 600 IPR011009 -
Cla08g01742 641 Pfam Protein tyrosine and serine/threonine kinase 278 591 IPR001245 GO:0004672|GO:0006468
Cla08g01742 641 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Cla08g01742 641 SMART serkin_6 275 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g01742 641 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 396 641 - -
Cla08g01742 641 PANTHER PROTEIN NSP-INTERACTING KINASE 3 6 365 - -
Cla08g01742 641 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Cla08g01742 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Cla08g01742 641 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 365 - -
Cla08g01742 641 ProSiteProfiles Protein kinase domain profile. 275 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01266 Cla-Chr6:25917869 Cla08g01742 Cla-Chr8:29908666 0 dispersed
Cla08g01742 Cla-Chr8:29908666 Cla11g00478 Cla-Chr11:5471599 0 dispersed
Cla08g01742 Cla-Chr8:29908666 Cla05g02357 Cla-Chr5:35159817 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80770 PF07714 PK_Tyr_Ser-Thr 1.20E-41 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g01742 - - csv:101208885 1060.83