Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00009 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAACGGCAAATACGTTCGGTACACACCGGAGCAGGTTGAAGCCCTCGAGCGGCTTTATCACGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGAGAGTGCCCCATTCTCTCTAACATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAGAATAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCGTCGCGGCTACAAGCTGTGAACAGAAAGCTTACGGCCATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGCAGTTGGTGTATGAGAATGGCTATTTCCGCCAGCATACTCAGAGTACGACGCTTGGAGCTAAAGATACAAGTTGTGAACCGGTAGTAACAAGCGGTCAACACAATTTGACGTCTCAGCATCCTCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCGTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACAGCTAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCACGGGACTTCTGGTTGTTGCGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTTAAGAACACTCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCTATCATTCATATTGTTGATCATATGGATCTGGAGGTAGAAGATATGCTTCCATGGAGTGTTCCAGAAGTATTGCGCCCACTGTATGAATCATCCACTGTTCTTGCTCAAAAGATGACTATGGCGGCTCTTCGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCAAATGTAACAGGCTGGGGTAGACGCCCTGCAGCCTTACGTTCACTTGGTCAGAGGCTTACCCGGGGTTTTAACGAGGCACTTAATGGGTTTAACGACGAAGGGTGGTCTGTGATGGGAAATGATGGAATGGATGATGTAACTATTCTCGTAAATTCATCTCCCGACAAGCTAATGGGATTGAACATTTCATTTGCAAATGGATTTTCTGCCATCAGTAATGCAGTTCTATGTGCTAGAGCATCGATGCTGTTGCAGAATGTGCCTCCTGCAATTCTGCTGAGGTTTCTGCGGGAGCACAGGTCAGAATGGGCAGACAACAATATTGATGCTTATTCAGCTGCTGCTGTTAAGGTTGGCCCATGGAGCTTACCAGGGTCTAGAGTTGGAAGCTTCGGGAATCAAGTGATACTTCCTCTGGCTCATACCATTGAGCATGAAGAGTTTCTAGAAGTGATTAAACTGGAAGGCATTAGCCATACTCCGGAAGATGCGATGATGCCTAGAGAAATGTTTCTACTGCAACTCTGCAGTGGAATGGATGAAAATGCTATTGGCACTTGTGCTGAACTAATCTTTGCTCCAATTGATGCCTCTTTTGCTGATGACGCGCCTCTTTTACCGTCAGGGTTTCGGATCATACCACTTGATTCCGGAAAGGAAGCATCCAGCCCAAATCGCACGCTTGATCTTGCTTCTGCTCTTGAAATTGGCCCTGCTGGAAATAGAGCACCAAACGACTCTGTAAATTCTGGCTGTTCCAGGTCTGTAATGACGATTGCATTTGAGTTTGCATTTGAGAGCCATATGCAAGAACATGTGGCTTCGATGGCTCGACAATATGTACGTAGTATTATATCATCTGTTCAGAGGGTTGCATTAGCTCTCTCACCTTCTCATTTAAGTTCACATGCTGGACTACGATCTCCACTTGGTACTCCTGAAGCACAGACACTTGCTCGTTGGATCTGCAACAGTTACAGGTGCTACTTGGGGGTGGAGCTGTTAAAATCTGGAAATGAAGGAGGGGAGCTTGTCCTGAAAACATTGTGGCATCATTCGGATGCAATCATGTGCTGCTCTCTAAAGGCACTGCCAGTGTTCACCTTTGCAAATCAGGCAGGCCTCGACATGCTTGAGACAACCTTAGTCGCACTACAAGATATAACTTTGGAAAAGATATTCGATGACCATGGAAAAAAGATGCTCTGCTCAGAATTTCCACAGATAATGCAACAGGGATTTGCTTGTCTTCAAGGAGGCATATGCCTTTCGAGCATGGGCCGACCTGTCTCGTATGAAAGAGCTGTGGCTTGGAAGGTGCTGAATGATGAAGAAAATGCACACTGCATCTGCTTTATGTTTGTGAACTGGTCCTTTGTCTGA 2529 46.78 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTLGAKDTSCEPVVTSGQHNLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEVEDMLPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRSLGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGISHTPEDAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRAPNDSVNSGCSRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKMLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNDEENAHCICFMFVNWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 127599 134511 + ClCG09G000100.1 Cla09g00009 279429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00009 842 Gene3D - 195 381 IPR023393 -
Cla09g00009 842 MobiDBLite consensus disorder prediction 128 154 - -
Cla09g00009 842 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Cla09g00009 842 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Cla09g00009 842 SMART START_1 160 375 IPR002913 GO:0008289
Cla09g00009 842 Pfam START domain 161 374 IPR002913 GO:0008289
Cla09g00009 842 Gene3D - 10 83 - -
Cla09g00009 842 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 842 - -
Cla09g00009 842 CDD START_ArGLABRA2_like 155 376 - -
Cla09g00009 842 ProSiteProfiles START domain profile. 151 384 IPR002913 GO:0008289
Cla09g00009 842 SMART HOX_1 14 80 IPR001356 GO:0003677
Cla09g00009 842 MobiDBLite consensus disorder prediction 128 150 - -
Cla09g00009 842 CDD bZIP 69 108 - -
Cla09g00009 842 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Cla09g00009 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 842 IPR044830 GO:0003700
Cla09g00009 842 CDD homeodomain 17 77 IPR001356 GO:0003677
Cla09g00009 842 Coils Coil 72 113 - -
Cla09g00009 842 Pfam MEKHLA domain 699 841 IPR013978 -
Cla09g00009 842 SUPERFAMILY Bet v1-like 160 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00588 Cla-Chr3:6693553 Cla09g00009 Cla-Chr9:127599 0 dispersed
Cla09g00009 Cla-Chr9:127599 Cla11g01479 Cla-Chr11:28421149 0 dispersed
Cla09g00009 Cla-Chr9:127599 Cla01g02453 Cla-Chr1:38229879 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61641 PF01852 START 1.70E-50 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00009 K09338 - csv:101213106 1668.29