Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00022 ATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATCGAACAGGCTTTGTAG 396 49.24 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 276663 278265 - ClCG09G000260.1 Cla09g00022 279442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00022 131 Pfam Profilin 1 129 IPR005455 GO:0003779
Cla09g00022 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cla09g00022 131 SUPERFAMILY Profilin (actin-binding protein) 2 129 IPR036140 -
Cla09g00022 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cla09g00022 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
Cla09g00022 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cla09g00022 131 CDD PROF 2 129 IPR005455 GO:0003779
Cla09g00022 131 SMART prof_2 1 131 IPR005455 GO:0003779
Cla09g00022 131 PANTHER PROFILIN 1 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00022 K05759 PFN; profilin - pop:7475105 249.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla07g01272 Cla09g00022 CCT
Cla07g01272 Cla09g00022 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00022 Cla-Chr9:276663 Cla11g00182 Cla-Chr11:2171837 2.58E-73 dispersed
Cla11g01470 Cla-Chr11:28339638 Cla09g00022 Cla-Chr9:276663 6.84E-73 transposed
Cla07g01272 Cla-Chr7:29844969 Cla09g00022 Cla-Chr9:276663 1.63E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g263 . . . . . . . . Cmo08g00707 Cmo17g00727 Cma01g00091 . Car01g00075 Car14g01139 Sed06g2183 Cpe12g00643 Cpe17g00524 Bhi01g03373 Tan04g2694 Cmetu04g1863 Lac11g0782 Hepe02g1450 . . Cla07g01272 Cam07g1227 Cec07g1455 Cco07g1416 Clacu07g1338 Cmu07g1316 Cre07g1699 . Cone17ag0127 . . Lsi02g02980 . Chy04g00956 . . . . . . . . . . Cmo01g00092 Cmo14g01321 Cma08g00743 Cma17g00758 Car08g00630 Car17g00703 Cpe02g01699 Cpe03g01090 Bhi09g00471 . . . . . . Cla09g00022 Cam09g0024 . Cco09g0025 . . . Lsi07g00531 Csa03g02348 . Cme04g01148
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT2G37620 96.8 7.9e-215 743.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.9e-214 740.7
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.0e-213 738.4
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.2e-212 734.9
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT2G37620 94.5 6.5e-209 723.4
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.5e-200 693.7
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT2G37620 96.5 4.6e-178 620.9
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 5.2e-214 740.3
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT5G59370 97.1 6.7e-214 740.0
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.5e-213 738.8
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 9.1e-211 729.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT5G59370 95.5 1.2e-210 729.2
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.5e-197 683.3
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT5G59370 96.2 4.3e-176 614.4
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G46520 97.3 3.0e-214 741.1
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.7e-214 740.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.5e-213 738.8
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 4.1e-211 730.7
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT3G46520 95.8 5.3e-211 730.3
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.4e-197 684.5
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G46520 96.5 1.9e-176 615.5
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G12110 97.1 3.6e-215 744.2
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.7e-215 743.8
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.8e-214 741.9
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.7e-213 736.1
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.8e-212 734.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT3G12110 94.7 1.0e-209 726.1
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.1e-199 691.8
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G12110 96.2 2.3e-177 618.6
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.0e-209 723.8
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT3G18780 92.3 1.9e-208 721.8
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.5e-208 721.5
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.4e-208 719.5
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cla09g01925 . 3 383 Cytoskeleton Gene Families AT3G18780 91.3 6.7e-206 713.4
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.8e-196 680.6
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT3G18780 92.8 3.4e-173 604.7
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT1G49240 92.6 6.5e-209 723.4
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.5e-209 723.0
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.2e-208 720.7
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.1e-207 718.4
Cla09g01925 . 2 383 Cytoskeleton Gene Families AT1G49240 91.1 5.2e-206 713.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.7e-196 682.2
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT1G49240 92.8 3.4e-173 604.7
Cla02g00072 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.5e-217 749.6
Cla09g01310 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 3.0e-214 741.1
Cla10g01670 . 56 432 Cytoskeleton Gene Families AT5G09810 96.6 6.7e-214 740.0
Cla02g01971 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.3e-213 737.6
Cla07g00303 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.3e-213 737.6
Cla09g01925 . 4 383 Cytoskeleton Gene Families AT5G09810 94.2 1.9e-208 721.8
Cla01g01535 CCT 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.1e-203 704.5
Cla04g00809 . 66 383 Cytoskeleton Gene Families AT5G09810 96.5 1.7e-177 619.0
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 9.0e-57 216.5
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.8e-55 211.1
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT2G19760 73.3 1.9e-54 208.8
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 5.5e-54 207.2
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT4G29350 71.8 2.1e-53 205.3
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 8.8e-52 199.9
Cla11g00182 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.6e-64 242.3
Cla09g00022 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.2e-57 218.0
Cla11g01470 . 1 131 Cytoskeleton Gene Families AT4G29340 73.1 2.5e-54 208.4
Cla07g01272 CCT,ECH 536 666 Cytoskeleton Gene Families AT4G29340 67.9 5.2e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00022 Cla_Chr09 FPKM 22.549053 24.701567 29.529964 31.043152 26.607109 27.387026 26.51561 51.364109 50.484291 47.857716