Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00022 ATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATCGAACAGGCTTTGTAG 396 49.24 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 276663 278265 - ClCG09G000260.1 Cla09g00022 279442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00022 131 Pfam Profilin 1 129 IPR005455 GO:0003779
Cla09g00022 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cla09g00022 131 SUPERFAMILY Profilin (actin-binding protein) 2 129 IPR036140 -
Cla09g00022 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cla09g00022 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
Cla09g00022 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cla09g00022 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cla09g00022 131 CDD PROF 2 129 IPR005455 GO:0003779
Cla09g00022 131 SMART prof_2 1 131 IPR005455 GO:0003779
Cla09g00022 131 PANTHER PROFILIN 1 131 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g01272 Cla09g00022 CCT
Cla07g01272 Cla09g00022 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00022 Cla-Chr9:276663 Cla11g00182 Cla-Chr11:2171837 2.58E-73 dispersed
Cla11g01470 Cla-Chr11:28339638 Cla09g00022 Cla-Chr9:276663 6.84E-73 transposed
Cla07g01272 Cla-Chr7:29844969 Cla09g00022 Cla-Chr9:276663 1.63E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00022 K05759 - pop:7475105 249.21