Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00030 ATGGATGTTTCAACATATTTGCTCTCTGCTTTTCTGAGTGGCCTAGCTCTTCTCAATCTTGTTCAAGCTCAAGGTCAATTAGGCTTCATAAGCTTAGATTGTGGATTGCCACCAAACACAAACTACATTGAACCAACAACAACACTTCAATTTACTTCTGATGCTGCTTATATAAACAGTGGTGAAAGCAAAAGCTTATCCTCTAATTATAACGAATATCTACAACGACAATATCTTCATGTTAGAAGCTTTACCCAAGGACGTAGGAATTGCTACAATCTAAGTGTAAAAAGGGATACAAAATATTTGATGCGAGCAAGTTTTTTCTATGGAAATTACGATGGGCTCAGCCAACTGCCGAAATTCGATCTCTATTTTGGAGATAGCTTATGGAAGACAGTGAATTTTACTGATGAAAACACATATACCACAATAGATTCCATACATGTAACCTCAGACAATCAAGTACAAATTTGTCTCGTCAACACAAACACTGGAACTCCATTCATCTCTTCATTGGAATTCAGACCTTTGCCAAATGAGACTTATAAGTTCTTGACAAGATCGTTGTTGCTTTACTATCGATTAGATATGGGTACAACAACGAACGAAACATACAGGTTTCCTGGTGATATATATGATCGATTTTGGACGCCTTTCAATTGGTACGAGTGGACAAGCATAAGTACCACACTTAAGATAGATTCAGCTGATAATAATTACTACCAGCCAGGATCTGCTGTCATGGGAACTGCAGCTATTAGAATAGATACAAAAAAGCCTATGGAAATTTGGTGGGAGCCTGAAGATGAAAACACCCAGTATTATGTATACATGCACTTTGCTGAAGTTGAAAATCTCCAAGCCAATCAATCCAGAGGATTCAACGTCACTTATAATGGGAGTTTTTGGTATGGTCCTCTCATTCCCAACTACTTGTCAACAATAACGCTCTACAATCGAGGGCCATTACCAACACCAAATAAAAAGCATCTGTTCTCATTTATACAAATTGAAAATTCAACACGCCCTCCAATCATAAATGCTATGGAAATTTATTCTGTAATAGATCTATCAGAGCTAACGTCAGATCAAGGAGATGTGGATGCAATAACAAGCATCAAGTCAACTTACGGAATAGTCAGAGATTGGGAAGGAGATCCATGTGTTCCAAGAGCATACCCTTGGGAGGGTATAGATTGTACCAAAACAAATGGAACTGCTCCTAGAATCGTGTCTTTGAATTTGTCATCAAGTGGATTGACAGGAGAGATTTCTCAAAGTATAGAGAATCTACAAATGATACAAATATTGGACTTGTCAAACAATGGCTTGACGGGAACTATCCCTGATTTTCTGTCTAACTTGTCAAACCTTGAAGTCTTAAAGTTAGACAACAACAAGCTTTCAGGCTCTATTCCATCTGAACTCGTTAAGAGACTCAATAATGGTTCATTAACGTTAAGTGTTCAAGGGAATCCAAATCTAGATTGCATATCAAATTCGTGCAAGAGTAAGAAGACTAGTGTTGTTATTCCAATTGTAGCATCAATTGGCGGAGTGGTAGTCATCATTGTAGTTTCAATCATCATCCTTTGGATTGTTAAATCAAGGAAGAAACGAAAAAATGAAACCGTTGTTCCAAAGGTGGATCCCTCAGGAAGCAATGACCAAATAAGTGATCAGTTGTTGGAGACAAGGAGGCGGCAGTTCACATATTCAGAAGTCTTGAGGATGACCAACAATTTCGAGAGAATCCTAGGAAAAGGAGGTTTCGGGATGGTTTATTATGGCACCATAAATGACACTCAAGTGGCTGTGAAGATGCTATCTCAAGCTTCAGGTCAAGGTTATCAACAGTTTCAAGCAGAGGTTACACTTCTTTTGAGAGTTCACCACAAAAACTTGACAAGTCTTGTGGGGTATTTGAATGAAGGAGACCGCCTTGGGCTCATTTATGAGCTCCGGATAGCCATGGATGCAGCACAAGGATTGGAGTACCTACACGATGGTTGCAAGCCACCCATAATCCATAGAGATGTGAAAACAACAAACATCTTATTGACAGAGAATTTCCAAGCCAAACTTGCAGATTTTGGTTTATCCAAAAGCTTCCCAGTAGATGGCAACAAAACTAACAACTACATGTCCACCATTGTTGCTGGAACCCCTGGTTACCTTGATCCAGACTACTACTTATCGAACAGGCTGACGGAGAAAAGCGATGTGTACAGCTTTGGAGTGGTTCTGTTGGAGATAATCAGCTGCAGACCTGTGATATCAAGAAGCGAAGAAAATGGTCATATCAGTAAATGGGTGAACTCGATGGTGGCTCAAGGGGACATAAATGGAATAGTTGATGAAAGATTGAGAGGAAAATATGATGGTAACTCAGTTTGGAAGGCAGTGGAGGTGGCGTTGAGTTGTGTATCTGTGAACTCTGGAAAAAGACCGACGATGAACCACGTGGTGGCGGAACTGAAGAGTTGTCTGGCCATGGAATTGGAACGGACGCCGGAGAGTCAAGGTTTCGATTCGACGAATTCCGTTAACATGATGTCCATTGTTATGGATTACAGTGAATCCGCACCAATGGCGAGTGTTGAAGGGAATCCAAATCTAGATGCATGTCTATCAGATTCATGTGCAAGGAAGAAGAGTGAGAAAAAAAAATGTGCATCAATTGGTGCATTGGTAGTCATCGCTGCAATTGCAACTAGAGTCTTTTGGATCGTTAAATCAAAAAAGAAACAGAAAAGCGAAAGTGTTGGTTTATTGGGGTCAAAAAGAGGAAATTTACATATTCAGAAGTATTGA 2817 39.72 MDVSTYLLSAFLSGLALLNLVQAQGQLGFISLDCGLPPNTNYIEPTTTLQFTSDAAYINSGESKSLSSNYNEYLQRQYLHVRSFTQGRRNCYNLSVKRDTKYLMRASFFYGNYDGLSQLPKFDLYFGDSLWKTVNFTDENTYTTIDSIHVTSDNQVQICLVNTNTGTPFISSLEFRPLPNETYKFLTRSLLLYYRLDMGTTTNETYRFPGDIYDRFWTPFNWYEWTSISTTLKIDSADNNYYQPGSAVMGTAAIRIDTKKPMEIWWEPEDENTQYYVYMHFAEVENLQANQSRGFNVTYNGSFWYGPLIPNYLSTITLYNRGPLPTPNKKHLFSFIQIENSTRPPIINAMEIYSVIDLSELTSDQGDVDAITSIKSTYGIVRDWEGDPCVPRAYPWEGIDCTKTNGTAPRIVSLNLSSSGLTGEISQSIENLQMIQILDLSNNGLTGTIPDFLSNLSNLEVLKLDNNKLSGSIPSELVKRLNNGSLTLSVQGNPNLDCISNSCKSKKTSVVIPIVASIGGVVVIIVVSIIILWIVKSRKKRKNETVVPKVDPSGSNDQISDQLLETRRRQFTYSEVLRMTNNFERILGKGGFGMVYYGTINDTQVAVKMLSQASGQGYQQFQAEVTLLLRVHHKNLTSLVGYLNEGDRLGLIYELRIAMDAAQGLEYLHDGCKPPIIHRDVKTTNILLTENFQAKLADFGLSKSFPVDGNKTNNYMSTIVAGTPGYLDPDYYLSNRLTEKSDVYSFGVVLLEIISCRPVISRSEENGHISKWVNSMVAQGDINGIVDERLRGKYDGNSVWKAVEVALSCVSVNSGKRPTMNHVVAELKSCLAMELERTPESQGFDSTNSVNMMSIVMDYSESAPMASVEGNPNLDACLSDSCARKKSEKKKCASIGALVVIAAIATRVFWIVKSKKKQKSESVGLLGSKRGNLHIQKY 938
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 339249 347103 + ClCG09G000360.1 Cla09g00030 279450
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00030 938 ProSiteProfiles Protein kinase domain profile. 581 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00030 938 Pfam Malectin-like domain 32 355 IPR024788 -
Cla09g00030 938 SUPERFAMILY Protein kinase-like (PK-like) 557 827 IPR011009 -
Cla09g00030 938 Gene3D Ribonuclease Inhibitor 368 497 IPR032675 -
Cla09g00030 938 Pfam Protein tyrosine and serine/threonine kinase 583 655 IPR001245 GO:0004672|GO:0006468
Cla09g00030 938 Gene3D Phosphorylase Kinase; domain 1 563 651 - -
Cla09g00030 938 ProSitePatterns Protein kinases ATP-binding region signature. 587 608 IPR017441 GO:0005524
Cla09g00030 938 Pfam Protein kinase domain 658 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00030 938 Gene3D Transferase(Phosphotransferase) domain 1 652 835 - -
Cla09g00030 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 676 688 IPR008271 GO:0004672|GO:0006468
Cla09g00030 938 PANTHER OS07G0107800 PROTEIN-RELATED 11 866 - -
Cla09g00030 938 SMART serkin_6 581 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00030 938 SUPERFAMILY L domain-like 394 482 - -
Cla09g00030 938 PANTHER OS07G0107800 PROTEIN-RELATED 867 923 - -
Cla09g00030 938 PANTHER PUTATIVE-RELATED 11 866 - -
Cla09g00030 938 PANTHER PUTATIVE-RELATED 867 923 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00563 Cla-Chr6:6824405 Cla09g00030 Cla-Chr9:339249 4.15E-46 dispersed
Cla09g00030 Cla-Chr9:339249 Cla09g00033 Cla-Chr9:350495 1.22E-08 dispersed
Cla09g00027 Cla-Chr9:302620 Cla09g00030 Cla-Chr9:339249 4.01E-17 proximal
Cla09g00030 Cla-Chr9:339249 Cla09g00032 Cla-Chr9:347106 4.75E-20 proximal
Cla03g00756 Cla-Chr3:9206299 Cla09g00030 Cla-Chr9:339249 3.68E-28 transposed
Cla06g00140 Cla-Chr6:1604412 Cla09g00030 Cla-Chr9:339249 1.58E-86 transposed
Cla07g01284 Cla-Chr7:29929867 Cla09g00030 Cla-Chr9:339249 1.46E-20 transposed
Cla11g01631 Cla-Chr11:30002694 Cla09g00030 Cla-Chr9:339249 0 transposed
Cla07g01283 Cla-Chr7:29920451 Cla09g00030 Cla-Chr9:339249 1.44E-11 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80772 PF12819 Malectin_like 2.80E-109 CL0202 Cla PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00030 - - csv:101205965 1437.55