Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00034 ATGTCCACTTTCTTTCAGGTTACAATTCTTATGAGAGTTCACCACAGAAACTTAACAAGCCTTGTAGGGTGTATGAATGATGGAGGTCACCTTGGCCTCATTTATGAGTACATGGCCAGAGGAAATCTGGCCGAGCATCTTTCTGTGAAAAGCTCAAGTATCTTAAGCTGGGAAAACAGACTTCGGATTGCAATAGATGCAGCTCAAGGGCTGGAGTATCTGCATCATGGTTGTAAGCCACCAATAGTCCACAGGGATGTGAAAACAACAAACATCTTATTGACAGAAAAATTCAACGCCAAACTTTCTGATTTTGGTCTTTCCAAGACTTATCCAACAGATGACAAGTCCTACATGAGCACTGTTATTGTTGGCACTCCCGGTTACCTTGATCCAGAGTACTTTACATCAAACAGGCTAACTGAAAAAAGCGATGTGTATGGTTTTGGAGTTTCCTTGATGGAAGTAATTAGTTGCAGACCAGTAATTTCAAACATCCAAGACCCGGAAACGAATTACATAGCCAAATGGCTTCGTACCATGGTTGCTCAGGGAGATATCAAGAACATAGTCGACCCAAGGTTAAAAGAAGCATATGAATGTAACTCTGTTTGGAAAGCTGTAAAAGTAGCATTGGCTTGCGTATCAGAAAACTCCAGTCAAAGGCCAACGATGAATCAAGTGGTGATAGAGCTGAAGGATTGCTTGGGCATGGAGTTGAATCAGAGATCTAAAAGTAGTCCACTGAAATGA 753 41.57 MSTFFQVTILMRVHHRNLTSLVGCMNDGGHLGLIYEYMARGNLAEHLSVKSSSILSWENRLRIAIDAAQGLEYLHHGCKPPIVHRDVKTTNILLTEKFNAKLSDFGLSKTYPTDDKSYMSTVIVGTPGYLDPEYFTSNRLTEKSDVYGFGVSLMEVISCRPVISNIQDPETNYIAKWLRTMVAQGDIKNIVDPRLKEAYECNSVWKAVKVALACVSENSSQRPTMNQVVIELKDCLGMELNQRSKSSPLK 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 359975 361135 + ClCG09G000410.2 Cla09g00034 279454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00034 250 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00034 250 Gene3D Transferase(Phosphotransferase) domain 1 39 247 - -
Cla09g00034 250 Pfam Protein tyrosine and serine/threonine kinase 7 231 IPR001245 GO:0004672|GO:0006468
Cla09g00034 250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 82 94 IPR008271 GO:0004672|GO:0006468
Cla09g00034 250 PANTHER OS07G0107800 PROTEIN-RELATED 7 248 - -
Cla09g00034 250 SMART serkin_6 5 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00034 250 Gene3D Phosphorylase Kinase; domain 1 3 38 - -
Cla09g00034 250 PANTHER PUTATIVE-RELATED 7 248 - -
Cla09g00034 250 SUPERFAMILY Protein kinase-like (PK-like) 6 231 IPR011009 -
Cla09g00034 250 PIRSF ILK 4 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00034 Cla-Chr9:359975 Cla09g00038 Cla-Chr9:377123 7.94E-65 dispersed
Cla09g00033 Cla-Chr9:350495 Cla09g00034 Cla-Chr9:359975 2.59E-116 tandem
Cla09g00034 Cla-Chr9:359975 Cla09g00035 Cla-Chr9:361115 2.00E-16 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80775 PF07714 PK_Tyr_Ser-Thr 2.20E-37 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00034 - - bhj:120084508 450.284