Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00038 ATGATATGTTTTTATGACAGCATGGAAGATAATCCAAATCTTGATGGTGCTTGTGCCTCAGACTCGTGTGCAAAGGAGAAGAAGAAAAGTTTTGTTGTACCAGTTGTTGCGTCAGTTGGTGGATTGCTTGTCGTCCTCATAGTGGCTGCAGTCATCTTTTGGATCATGAAATTACGGAACAAGCCACAAGATCATTCTACATTCCCAGTCCCAAGGGTCAAAGATACCAAATCCAGCAATGACTCATTCGAGGTAAAAAGACGACAATTTACATATTCTGAGATAGTGAGGATGACAGATAATTTTGCAAGGCCACTGGGAGAAGGAGGTTCGGGAACAGTTTACCTTGGTCACATAGATAATGTTCAAGTAGCTGTAAAGATGCTATCTCCATTATCAGCCCATAGTTATCAGCAATTTCAAACAGAGGCAAGTGTGAAACTTCTCATGAGAGTTTACCATGGAAACTTGACAAGCCTTGTTGGGTACTTGAATGAAAAAGACCACTTTGGACTTATTTACGAGTATATGACCAAGGGTAACTTAGCACAGGTTCTTTCAGGTAATTGTTGGGAACTAGTTCAAACTATATACCATATATGTGCTACACAATTTCAGTTAATTAAAAGTCCAGTTCTCTTAACCTGGGAAGATAGACTTCGGATAGCAATAGATGCAGCACAAGGACTGGAGTACCTGCATCATGGTTGTAAGCCACCCATAGTCCACAGAGATGTCAAAACAACAAACATATTGCTAACAGACAATTTCCAAGCCAAACTTGCTGATTTCGGACTCTCCAAAAGTTTCCCAAATGATGGTAGCAAGACTCACATGTCCACAATGGTGGCTGGCACTCCTGGTTACTTTGATCCAGAATACTACACCTCGAACAGACTGACTGAGAAAAGTGATGTTTATAGCTTCGGAGTAGTATTGTTGGAGATAATTACTTGCAGACCAGTGATTTCCAGAGCTCAGGAAAACGTTCACATAATTCAATGGGCGACCACCATGATTGCGCGAGGGGACATCAGGAACGTGATCGACTCAAGATTAAAAGGGGAATTCAACTCCAACTCTGCTCGGAAATCGGTGGAAATAGCAATGGCTTGCGTGTCTTCAAATTCAAGCAGTAGGCCGACAATGAACCAGGTAGTAACAGAACTGAAGAATTGCCTGGCCATGGAAATGAGTCGGAAGACAGAGAATCGCTCTCTTAATTCAAGGAATTCCAGTGAGACGTTCTCAATTTCCATTACTTTACCAACATCCAGTTTCATCAGCATAGATTGTGGTATACCAGAAAACTCCAATTATACTGATGATATAACAAGGCTCAAGTATGTTTCTGATGCCAAGTTTATCGATACAGGTGAAATCCATGACGTATCACCTGAATACAAGAACAAATTAGAGAGGCAACTCAGGAATCTAAGAAGTTTTCCTGAAGGAATCAGAAACTGTTACACCATAAGAACACAAGGGGGTGAGGGAGAAAGGTACTTGATCAGAGTGAGTTTCATGTATGGAAACTATGATAACAAACAACAACCACCAACTTTTGATTTATTTCTTGGGGTTGATCATTGGGATTCAGTTTTTCTGCTGAATGCTTCTGAAATAGTAACAAAAGAACTGATACATGTCCCACCATTGGATTATATGCAAATCTGTCTAATAAACATTGGAAAAGGAGTGCCATTCATATCAGCAATAGAGATTAGGCCTCTGGATAATAATTTCACTTATGTGGCAAGATCTGGCTCCTTGATGCTCTATCAGCGGCTAGATTATGGTCTAGAAAGCAACCAAATTGTAAGGTATCCCAATGATAGTTATGACCGGATATGGTCGTCCTCAACCTTATCTGGCTCAAAAATCATATCTTCTAACCATTCAATTGGGTCAAATACATTTGCAATTCCATCAATTGTCTTGGAAACTGCAGTTACACCAAAAAATCACCACCAGCCCCTGAATATTTTGTGGCATACTAGTAACGAAACGGATCAGTTCTATATTTACATGCACTTTGCAGATATCCATAAGATGGGGAAAGGGCAGTTTAGAGCCTTAAACATCTCAGTCCATGGATTACTTTGGTATGGGCCATTGGTTCCCGAATATTTGTTCACTACCACACTCTATAGCACTGGTGGCATCACTGCTGCAAATGGAGGTAACCTTGAGTTCTCCATTAGAAAAAATGAAAGTTCAAGTCTTCCACCCATAATCAATGCCATTGAGATTTTTGTACAAAAGCAGTTCCCACAGTTGCAAACAGACCAAACTGAAATTGAGGCACTGCTGAACATAAAATTAGCATACAATCTGAAGAAAAACTGGCAAGGAGATCCATGTTACCCTCAAGAATACTCGTGGACTGGTCTTAATTGCAGTTACATTAGCGACGGCCAACCGAAAATCACATCCTTGAACTTGTCGTCAAGTGGCTTGGCTGGGGGAATTTCTTCTCACATATCAAATCTTATCATGCTACAATACCTGGATTTGTCCAACAATCATTTAAATGGCACAGTTCCAGACTTTCCAGCTAGACTGCCATCCTTGAGAGTTCTAAACCTGGCAAACAATAATCTCTCAGGGATAATTCCGCAGGCACTGATCGAAAGATCAAGAAATGAAACCTTATCATTGAGTGCCGAAGGCAATCCATATCTTTGTCTATCAGAGCCCTGCAATAAAAAAGAGGAGAAGGAGTATGTAATTCCATTAGCAGCATCACTTGGTGGAGTTATATTAGCATTGTTAACCGGAGGAGCGATCCTTTGGAGCCAAAGAAGACGAAAACAGAAAGAAAAACAGATCTCTGGGAGTAGCAAGCAAGGCGAGACATTACTAATGCCAGAGAAAACACGGTTTACCTACTCAGAAATTTTAAGTATAACAAACAACTTTGAGAGGGTAATAGGGAAGGGAGGATTTGGAACAGTTTATCATGGTTACTTGCATAGCATCCAAGTTTCTGTGAAAATGCTGTCCCCTGCATCAGTTCAAGGTTACAAGCAATTTCAGGGAGAGGCACAATTGCTTACTACAGTCCACCATGAAAACTTAACTTCCGTACTTGGATATTGTGATGAAGACACTCACCTAGGACTGAGACTGAGAATTGCTCTGGATGCAGCACAAGGGTTAGAGTACCTTCATTTTGGCTGTAAGCCACCAATTATTCACAGAGACCTGAAGTCTACAAACATATTACTACATAAAAACCTCCGTGCCAAATTAGCTGATTTTGGCTTGTCAAAAGCATTCCAATCAGGAGATGGAGCTCAGGCATCTGCAGCTGTTGGCACCCCAGGATACCTTGACCCAGAGTACGCTGTGACAAACAAGTTAAATGAGAAGAGTGACGTTTATAGCTTTGGGGTGATTTTACTTGAAATTGTCACTGGTCAGCCAGCAATAACAAAAACTCAGGACAAAACCCATGTCATCAAAAGGGTTATTTCAGTGCTTGAGGAAGGGGAAATCAAGAACACAGTCGACCCAAAATTAGGATTGGACATTAATAATAGTTCTATTAGGAAATTTATTGAATTGGCAATGACCTGTGTGTCTTCATCTTCAACTGAGAGGCCAACCATGGCTCAGGTAGTGATGGAGCTGAAGAAATGCTTGGCTATCTTGGAGAATTATCAGGAAGACAATGGTGAATTCAGTTCCAGCCTTGAATTGGTCTCTCTGAATTCATCAATTAAAGATCTCCAAGAAAGCTTCTGTGTTTCAATACCAATCTTTGTTATTCTCAAGAAAGAAATTAAAGGCAGTGTTTTGGCTAGAAATTTG 3816 40.59 MICFYDSMEDNPNLDGACASDSCAKEKKKSFVVPVVASVGGLLVVLIVAAVIFWIMKLRNKPQDHSTFPVPRVKDTKSSNDSFEVKRRQFTYSEIVRMTDNFARPLGEGGSGTVYLGHIDNVQVAVKMLSPLSAHSYQQFQTEASVKLLMRVYHGNLTSLVGYLNEKDHFGLIYEYMTKGNLAQVLSGNCWELVQTIYHICATQFQLIKSPVLLTWEDRLRIAIDAAQGLEYLHHGCKPPIVHRDVKTTNILLTDNFQAKLADFGLSKSFPNDGSKTHMSTMVAGTPGYFDPEYYTSNRLTEKSDVYSFGVVLLEIITCRPVISRAQENVHIIQWATTMIARGDIRNVIDSRLKGEFNSNSARKSVEIAMACVSSNSSSRPTMNQVVTELKNCLAMEMSRKTENRSLNSRNSSETFSISITLPTSSFISIDCGIPENSNYTDDITRLKYVSDAKFIDTGEIHDVSPEYKNKLERQLRNLRSFPEGIRNCYTIRTQGGEGERYLIRVSFMYGNYDNKQQPPTFDLFLGVDHWDSVFLLNASEIVTKELIHVPPLDYMQICLINIGKGVPFISAIEIRPLDNNFTYVARSGSLMLYQRLDYGLESNQIVRYPNDSYDRIWSSSTLSGSKIISSNHSIGSNTFAIPSIVLETAVTPKNHHQPLNILWHTSNETDQFYIYMHFADIHKMGKGQFRALNISVHGLLWYGPLVPEYLFTTTLYSTGGITAANGGNLEFSIRKNESSSLPPIINAIEIFVQKQFPQLQTDQTEIEALLNIKLAYNLKKNWQGDPCYPQEYSWTGLNCSYISDGQPKITSLNLSSSGLAGGISSHISNLIMLQYLDLSNNHLNGTVPDFPARLPSLRVLNLANNNLSGIIPQALIERSRNETLSLSAEGNPYLCLSEPCNKKEEKEYVIPLAASLGGVILALLTGGAILWSQRRRKQKEKQISGSSKQGETLLMPEKTRFTYSEILSITNNFERVIGKGGFGTVYHGYLHSIQVSVKMLSPASVQGYKQFQGEAQLLTTVHHENLTSVLGYCDEDTHLGLRLRIALDAAQGLEYLHFGCKPPIIHRDLKSTNILLHKNLRAKLADFGLSKAFQSGDGAQASAAVGTPGYLDPEYAVTNKLNEKSDVYSFGVILLEIVTGQPAITKTQDKTHVIKRVISVLEEGEIKNTVDPKLGLDINNSSIRKFIELAMTCVSSSSTERPTMAQVVMELKKCLAILENYQEDNGEFSSSLELVSLNSSIKDLQESFCVSIPIFVILKKEIKGSVLARNL 1272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 377123 386802 + ClCG09G000440.1 Cla09g00038 279458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00038 1272 Gene3D Ribonuclease Inhibitor 765 888 IPR032675 -
Cla09g00038 1272 PANTHER OS07G0107800 PROTEIN-RELATED 9 413 - -
Cla09g00038 1272 PANTHER OS07G0107800 PROTEIN-RELATED 1043 1228 - -
Cla09g00038 1272 ProSitePatterns Protein kinases ATP-binding region signature. 106 127 IPR017441 GO:0005524
Cla09g00038 1272 PANTHER PUTATIVE-RELATED 9 413 - -
Cla09g00038 1272 PANTHER PUTATIVE-RELATED 1043 1228 - -
Cla09g00038 1272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Cla09g00038 1272 ProSiteProfiles Protein kinase domain profile. 972 1219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00038 1272 SUPERFAMILY Protein kinase-like (PK-like) 952 1212 IPR011009 -
Cla09g00038 1272 Pfam Protein kinase domain 1046 1209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00038 1272 PANTHER PUTATIVE-RELATED 423 1042 - -
Cla09g00038 1272 SUPERFAMILY Protein kinase-like (PK-like) 82 390 IPR011009 -
Cla09g00038 1272 Gene3D Phosphorylase Kinase; domain 1 959 1039 - -
Cla09g00038 1272 Gene3D Transferase(Phosphotransferase) domain 1 177 417 - -
Cla09g00038 1272 ProSiteProfiles Protein kinase domain profile. 100 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00038 1272 Pfam Protein tyrosine and serine/threonine kinase 102 390 IPR001245 GO:0004672|GO:0006468
Cla09g00038 1272 Pfam Protein tyrosine and serine/threonine kinase 974 1038 IPR001245 GO:0004672|GO:0006468
Cla09g00038 1272 Gene3D Transferase(Phosphotransferase) domain 1 1040 1246 - -
Cla09g00038 1272 Pfam Leucine rich repeat 834 887 IPR001611 GO:0005515
Cla09g00038 1272 PRINTS Leucine-rich repeat signature 855 868 - -
Cla09g00038 1272 PRINTS Leucine-rich repeat signature 834 847 - -
Cla09g00038 1272 PANTHER OS07G0107800 PROTEIN-RELATED 423 1042 - -
Cla09g00038 1272 SUPERFAMILY L domain-like 782 885 - -
Cla09g00038 1272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1065 1077 IPR008271 GO:0004672|GO:0006468
Cla09g00038 1272 Pfam Malectin-like domain 430 752 IPR024788 -
Cla09g00038 1272 SMART serkin_6 100 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00038 1272 SMART serkin_6 972 1219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00038 1272 Gene3D Phosphorylase Kinase; domain 1 82 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01341 Cla-Chr2:27649696 Cla09g00038 Cla-Chr9:377123 8.20E-26 dispersed
Cla09g00032 Cla-Chr9:347106 Cla09g00038 Cla-Chr9:377123 1.62E-11 dispersed
Cla09g00034 Cla-Chr9:359975 Cla09g00038 Cla-Chr9:377123 7.94E-65 dispersed
Cla09g00038 Cla-Chr9:377123 Cla11g01631 Cla-Chr11:30002694 2.44E-111 dispersed
Cla09g00035 Cla-Chr9:361115 Cla09g00038 Cla-Chr9:377123 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80777 PF12819 Malectin_like 5.90E-102 CL0202 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00038 - - csv:101207661 1298.11