Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00040 ATGCGAGATAAACCAGATAAGGGATTTGAATTGATAATGGATCATTTGAATTGGAATGGTTATGGATCAAGAGTTGCGACGAAAACGACGACGTCGGCATCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATAATTCCAACTTCTTCAACTCACTTCAAGACTTCCCAATTAAAGAAGCTGCAACTTCTTCAGCTCTGGTTTCAAAAACAGGGGAAGCTTTGGTTATCAGTCCTCCATTGACAAGCTTTACAACATCTAGCAACATGGATGTTGTTGGCCTTGAATCACAGCTCCTCACCGGCTTCAACGGCGACAAATCGGCGACGGTAACGACGTGCTCTCTCGAGTCGTTGGACTGTTTGCTTTCAGCTACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTTTCAATGATGTTAACAGATTACACCAATTTATGGAACTTCGGAAGAAATGCAGCAGCATCTTCAAGAGAATCTGAAAAGAATGGTTCAAATTCTACAAAGAGAAGCCATGACCAAACTCATTTCAAAGCTGCAGATTACTCTATTTTCTCAAATAACATCATAAATCTATCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAGAATCCGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAATTTTCAACAATCATGTTCATCAGGATCTTCTTGTATTGATCAAGAGCCTGATCCAGAGGCCATTGCACAAATGAAAGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTGGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATTTCAACAGACCCACAAACTGTAGCAGCCAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTAAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGCCCTCCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCATCATCATCCTCCCATAATAATTTCACGCTCCAAAATCCCAACCACCTTATTAGCCAATATCCCCAAAACTAA 1212 40.59 MRDKPDKGFELIMDHLNWNGYGSRVATKTTTSASFWSNYQQGVEERFMISNSNNSNFFNSLQDFPIKEAATSSALVSKTGEALVISPPLTSFTTSSNMDVVGLESQLLTGFNGDKSATVTTCSLESLDCLLSATNSNTDTSVEDDGSVSMMLTDYTNLWNFGRNAAASSRESEKNGSNSTKRSHDQTHFKAADYSIFSNNIINLSDSTSDSGGFRIITDQNPPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTSSSSSHNNFTLQNPNHLISQYPQN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 395291 401508 - ClCG09G000460.2 Cla09g00040 279460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00040 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 359 IPR036638 GO:0046983
Cla09g00040 403 Gene3D - 299 362 IPR036638 GO:0046983
Cla09g00040 403 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 30 398 IPR045843 GO:0003700|GO:0006355
Cla09g00040 403 MobiDBLite consensus disorder prediction 211 255 - -
Cla09g00040 403 SMART finulus 300 349 IPR011598 GO:0046983
Cla09g00040 403 MobiDBLite consensus disorder prediction 232 253 - -
Cla09g00040 403 MobiDBLite consensus disorder prediction 380 403 - -
Cla09g00040 403 Coils Coil 333 360 - -
Cla09g00040 403 MobiDBLite consensus disorder prediction 166 185 - -
Cla09g00040 403 Pfam Helix-loop-helix DNA-binding domain 304 343 IPR011598 GO:0046983
Cla09g00040 403 PANTHER TRANSCRIPTION FACTOR BHLH87 30 398 - -
Cla09g00040 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02049 Cla-Chr5:32207526 Cla09g00040 Cla-Chr9:395291 8.58E-31 dispersed
Cla08g01577 Cla-Chr8:28452061 Cla09g00040 Cla-Chr9:395291 2.03E-31 dispersed
Cla09g00040 Cla-Chr9:395291 Cla04g00691 Cla-Chr4:21710870 6.18E-23 dispersed
Cla07g01286 Cla-Chr7:29962990 Cla09g00040 Cla-Chr9:395291 5.22E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61643 PF00010 HLH 7.50E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00040 - - csv:101207907 658.677