Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00040 | ATGCGAGATAAACCAGATAAGGGATTTGAATTGATAATGGATCATTTGAATTGGAATGGTTATGGATCAAGAGTTGCGACGAAAACGACGACGTCGGCATCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATAATTCCAACTTCTTCAACTCACTTCAAGACTTCCCAATTAAAGAAGCTGCAACTTCTTCAGCTCTGGTTTCAAAAACAGGGGAAGCTTTGGTTATCAGTCCTCCATTGACAAGCTTTACAACATCTAGCAACATGGATGTTGTTGGCCTTGAATCACAGCTCCTCACCGGCTTCAACGGCGACAAATCGGCGACGGTAACGACGTGCTCTCTCGAGTCGTTGGACTGTTTGCTTTCAGCTACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTTTCAATGATGTTAACAGATTACACCAATTTATGGAACTTCGGAAGAAATGCAGCAGCATCTTCAAGAGAATCTGAAAAGAATGGTTCAAATTCTACAAAGAGAAGCCATGACCAAACTCATTTCAAAGCTGCAGATTACTCTATTTTCTCAAATAACATCATAAATCTATCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAGAATCCGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAATTTTCAACAATCATGTTCATCAGGATCTTCTTGTATTGATCAAGAGCCTGATCCAGAGGCCATTGCACAAATGAAAGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTGGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATTTCAACAGACCCACAAACTGTAGCAGCCAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTAAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGCCCTCCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCATCATCATCCTCCCATAATAATTTCACGCTCCAAAATCCCAACCACCTTATTAGCCAATATCCCCAAAACTAA | 1212 | 40.59 | MRDKPDKGFELIMDHLNWNGYGSRVATKTTTSASFWSNYQQGVEERFMISNSNNSNFFNSLQDFPIKEAATSSALVSKTGEALVISPPLTSFTTSSNMDVVGLESQLLTGFNGDKSATVTTCSLESLDCLLSATNSNTDTSVEDDGSVSMMLTDYTNLWNFGRNAAASSRESEKNGSNSTKRSHDQTHFKAADYSIFSNNIINLSDSTSDSGGFRIITDQNPPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTSSSSSHNNFTLQNPNHLISQYPQN | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 395291 | 401508 | - | ClCG09G000460.2 | Cla09g00040 | 279460 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00040 | 403 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 299 | 359 | IPR036638 | GO:0046983 | |
Cla09g00040 | 403 | Gene3D | - | 299 | 362 | IPR036638 | GO:0046983 | |
Cla09g00040 | 403 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 30 | 398 | IPR045843 | GO:0003700|GO:0006355 | |
Cla09g00040 | 403 | MobiDBLite | consensus disorder prediction | 211 | 255 | - | - | |
Cla09g00040 | 403 | SMART | finulus | 300 | 349 | IPR011598 | GO:0046983 | |
Cla09g00040 | 403 | MobiDBLite | consensus disorder prediction | 232 | 253 | - | - | |
Cla09g00040 | 403 | MobiDBLite | consensus disorder prediction | 380 | 403 | - | - | |
Cla09g00040 | 403 | Coils | Coil | 333 | 360 | - | - | |
Cla09g00040 | 403 | MobiDBLite | consensus disorder prediction | 166 | 185 | - | - | |
Cla09g00040 | 403 | Pfam | Helix-loop-helix DNA-binding domain | 304 | 343 | IPR011598 | GO:0046983 | |
Cla09g00040 | 403 | PANTHER | TRANSCRIPTION FACTOR BHLH87 | 30 | 398 | - | - | |
Cla09g00040 | 403 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 294 | 343 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g02049 | Cla-Chr5:32207526 | Cla09g00040 | Cla-Chr9:395291 | 8.58E-31 | dispersed | |
Cla08g01577 | Cla-Chr8:28452061 | Cla09g00040 | Cla-Chr9:395291 | 2.03E-31 | dispersed | |
Cla09g00040 | Cla-Chr9:395291 | Cla04g00691 | Cla-Chr4:21710870 | 6.18E-23 | dispersed | |
Cla07g01286 | Cla-Chr7:29962990 | Cla09g00040 | Cla-Chr9:395291 | 5.22E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61643 | PF00010 | HLH | 7.50E-06 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00040 | - | - | csv:101207907 | 658.677 |