Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00062 ATGAAAACTGCAGAAATTTCCTTTGAAATTAGGACTCTGATGGGGTTTCGATTACTGTTTCTGCTGTTCCAAATTTATTTTGCTGTTAGCTCTTTCTCTGTCTGTGAAGCTGCAGTTATTCTCCCAGGCAGGCCGAGTGGATTGCGTTCTGCACTCCCAGACCATGCTGTCACTCCAACATCTCATGGCTTTGGCAGGAAACACCATGGCAATTTGGATAATGCAGCCCCTAGTAAACCATTTAAAAGTTCATCTCCTCAGATCCATTCTCATTATAAAGCCATTCAATCAGATTATTCAAGTAGAGCTCCTAGCATTGCACTTCCGCCCACCGCGCCTGCTGAGAAATGGGGGCACGAACATACACTCTCACCATTGATCTCTTTTCATAAATTTCGTCATTCAAGAAGGAAGTTCAGGAACAATGCTCCACAGCCTACTTATCATGCATCGCCCCCGACTAGCAGCCAGAAAGGCCCTGCTGCTGTCTCTCCAATTCAGTCACCGTTACCATCTGTAGCGAGAGGGAGGTTGCCCGGACCTGCACCATCACCAACAATTCAACCCAACCACTATTATATGCCCATTCCTGCACCTACAACTTCTCCTATGGGTTCTTACAAGAAGAAGAAGAGTATGCCACCATCACAAGTTATGATTCTACCACCTCCACCTCCTAATGGGGATTGTACAATAGCATGTACAGAGCCATTGACATATACGCCTCCCGGGACGCAATGTGGCTGCGTGTGGCCAATTCAAGTCAAAATCATTCTTGATGTTGCAGTATACACGTTTTTTCCTCTGGTTTCAGAACTTGCAGAGGAAATTGCTGACAGTATCAGTCTGAACCAAAGCCAAGTTCGAATTATGGGAGCCGATGCTGCTAGTCAGCAGTTAGAAAAAACGACTGTCCTCATCAACTTGGTTCCGAGAGGATCAAAATTCAATCATAACACAGCCTTTTTTATATATCAGAAATTTTGGCGGAGAAAGATATTCATCAACCCTTCTTTGTTTGGAAGATATCAAAGTGGATCTGGACAAGTGAATCTAGTGCAGTTGACAGTTGTGCTAAGATGTCTTCCGCCATCTCCTCCATTGGCGCCTTCAGGTACGTCGTCTATTAATGATGGTTTGAACACTAGCAATACTAATGCTGGAAATGCAATTAAACCGTTGGGAGTTGACGTGCCAAGACGAAAAAAAGAAGGGCTTGGCAGAAACATGATTGCGGTGATTACTATATCATCGTTCACTGCCCTTGTCATGTGTGTTGGGCTTGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTCTACACATCAACCAGCACAAATTCCTCAAAACTTGATAGCCTCACCTACAAAACCACCAGGCACTGCTGGATTGATAATGGTTGGAAGTGAACCTGGTTCTTCATCCATGCCTCTCGATGCCGATCCTATGACGTATATTGGAGCTGCAAAGAACTTCACCTTGAAAGATATGGAGAAAGCCACTGACAACTTCGATACTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTATACAGTGGCAGTTTAGACGATGGAAGAGAAGTGGCTGTGAAGGTTCTTAAACGACATAATCAACATGGTATTCGGGAATTCTTGGCAGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAGTTGATTGGTATCTGCACAGAAGATCAGATTCGCTGCCTGGTATATGAATTGGTTCCTAGTGGAAGTGTCGAATCACACTTACATGGCATTGACAAGTTAACCAGTCCACTTGACTGGGATGCCCGCATGAAGATTGCCCTTGGTGCTGCTCGAGGCCTAGCCTATCTGCATGAAGACTCCAATCCTCGAGTCATTCATCGAGACTTCAAAGCTAGCAACATCTTGTTGGAATATGACTTTACACCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACACATGTCATGGGAACTTTTGGTTATCTAGCTCCAGAATATGCAATGACTGGCCACCTTCTTGTAAAGAGCGATGTCTATAGCTATGGTGTTGTCCTTCTAGAGCTGCTTACAGGAAGAAAGCCAGTAGACTTGTCACTTCCACCCGGACAAGAAAATCTTGTTGCTTGGGCTCGTCCGCTTCTCACGAGCAAGGAAGGATTAGATGCAATAACAGACCCAGCTATCAAGTCTGACATCTCCATTGATAGCTTGGCCAGAGTAGCAGCGATTGCTTCAATGTGTGTACAGCCAGAAGTATCTCACAGACCATTTATGGGTGAGGTTGTTCAAGCCCTGAAACTTGTTTGCAATGAATTTGAAGAAACTAACGATCCAGTTTCACGAAGTTACAGCCGAGACGAACTTCTAAGTTACATGGATAGTAAATTTGGAGGAATTTCCGGTGAAATACTAAACGCTCCTGAGACCTCGCACACCTTTCCTTCAGGAAAAGAGAAGAATGTAGGATTATCGGCGTCGGATTTGATCAGTGCATCTGCAAGATTTGAAGGACAGGAACTGGTTTCTTCTAGATGGCATTCATCAAACTCGGAACCATTAAGAACTGGAAGAAAAAAGCACTTATGGCAGAAGCTAAGAAGTTTCTCACGAGGCAGCTTCAGTGAACATGGCTTTTCTGCAAAGTTTTGGCCTGGATTTCGTTAG 2697 44.27 MKTAEISFEIRTLMGFRLLFLLFQIYFAVSSFSVCEAAVILPGRPSGLRSALPDHAVTPTSHGFGRKHHGNLDNAAPSKPFKSSSPQIHSHYKAIQSDYSSRAPSIALPPTAPAEKWGHEHTLSPLISFHKFRHSRRKFRNNAPQPTYHASPPTSSQKGPAAVSPIQSPLPSVARGRLPGPAPSPTIQPNHYYMPIPAPTTSPMGSYKKKKSMPPSQVMILPPPPPNGDCTIACTEPLTYTPPGTQCGCVWPIQVKIILDVAVYTFFPLVSELAEEIADSISLNQSQVRIMGADAASQQLEKTTVLINLVPRGSKFNHNTAFFIYQKFWRRKIFINPSLFGRYQSGSGQVNLVQLTVVLRCLPPSPPLAPSGTSSINDGLNTSNTNAGNAIKPLGVDVPRRKKEGLGRNMIAVITISSFTALVMCVGLAWLCLLRCRVSTHQPAQIPQNLIASPTKPPGTAGLIMVGSEPGSSSMPLDADPMTYIGAAKNFTLKDMEKATDNFDTARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPSGSVESHLHGIDKLTSPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSLPPGQENLVAWARPLLTSKEGLDAITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNDPVSRSYSRDELLSYMDSKFGGISGEILNAPETSHTFPSGKEKNVGLSASDLISASARFEGQELVSSRWHSSNSEPLRTGRKKHLWQKLRSFSRGSFSEHGFSAKFWPGFR 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 598165 603376 - ClCG09G000690.2 Cla09g00062 279482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00062 898 Gene3D Phosphorylase Kinase; domain 1 474 578 - -
Cla09g00062 898 PANTHER OS01G0750732 PROTEIN 77 897 - -
Cla09g00062 898 MobiDBLite consensus disorder prediction 141 163 - -
Cla09g00062 898 SUPERFAMILY Protein kinase-like (PK-like) 483 776 IPR011009 -
Cla09g00062 898 Gene3D Transferase(Phosphotransferase) domain 1 579 798 - -
Cla09g00062 898 PANTHER OS01G0750732 PROTEIN 77 897 - -
Cla09g00062 898 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Cla09g00062 898 CDD STKc_IRAK 509 777 - -
Cla09g00062 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Cla09g00062 898 MobiDBLite consensus disorder prediction 59 86 - -
Cla09g00062 898 MobiDBLite consensus disorder prediction 141 192 - -
Cla09g00062 898 MobiDBLite consensus disorder prediction 176 192 - -
Cla09g00062 898 Pfam Protein tyrosine and serine/threonine kinase 506 776 IPR001245 GO:0004672|GO:0006468
Cla09g00062 898 ProSiteProfiles Protein kinase domain profile. 503 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00141 Cla-Chr7:1588057 Cla09g00062 Cla-Chr9:598165 0 dispersed
Cla09g00062 Cla-Chr9:598165 Cla10g01096 Cla-Chr10:25170630 5.32E-123 dispersed
Cla03g01496 Cla-Chr3:30528622 Cla09g00062 Cla-Chr9:598165 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80778 PF07714 PK_Tyr_Ser-Thr 1.00E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00062 - - csv:101219484 1641.71