Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00064 ATGAGCCCCATCAATCACCACCAACACTTCTCCAAATCCACCTCCGCCGCCGTCACAACCACCACTTCCTCCACCACCACCACCACCCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCTTATTTCCCTCACGATCGTCAACGTCAATTCTTAAACGCTCACAAACTCTTCGGCGTTAGCAATATCACTAAAATCATTAAGAATCTCGATCCGTTTGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTCGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGACCTTCAACGCCAAATTGAATATAGCAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCTATTTGTAAACAGCAGGCCGCTGCTGCTGCGGCTGCTGCTGCGGCCGCTGCGGCTATTCTTGAGGCGGATCCGATGAGTGGATACGGCGGAATCGAGCATCAATTTGTGGAAGGGTATGAAGGGGAAGGGTTTGTAGTTGGGGAAAATGAGAATGGGGAAAGTTTGGAAGATCAGGACGTGGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCATTACAATTGAAACAAGCCGGCTCTGTTCATGATTTTCACGATATCAAGATCGATACAAATAATAATCACCTTCAACAACAACTTAAATTTCAACACGATCGTCATCCTGATCTGGTTCATCAGAGTGAAGAACCTATGCTGAAGATGGACAATGTGATATTGAAAGAAGATTCTGACCCAATACAGCAGGCTCAAGATCAAGAACTTAAAGACCAGTTGCTTAGTTTCTCTTTGCTTCTTACTAACAACCTCAAAAGGTTGCAGGTTCGGGGGTTAAGGCACCTGCTCCTGCTTCTTTCCTTGAAGTAG 918 46.51 MSPINHHQHFSKSTSAAVTTTTSSTTTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQAAAAAAAAAAAAAILEADPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQDVEVWGIQDSCSSLQLKQAGSVHDFHDIKIDTNNNHLQQQLKFQHDRHPDLVHQSEEPMLKMDNVILKEDSDPIQQAQDQELKDQLLSFSLLLTNNLKRLQVRGLRHLLLLLSLK 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 619172 621600 - ClCG09G000720.2 Cla09g00064 279484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00064 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 25 247 - -
Cla09g00064 305 Pfam Lateral organ boundaries (LOB) domain 31 126 IPR004883 -
Cla09g00064 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 25 247 - -
Cla09g00064 305 MobiDBLite consensus disorder prediction 1 21 - -
Cla09g00064 305 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01671 Cla-Chr8:29358327 Cla09g00064 Cla-Chr9:619172 1.91E-28 dispersed
Cla09g00064 Cla-Chr9:619172 Cla09g01802 Cla-Chr9:35578162 3.25E-33 dispersed
Cla09g00064 Cla-Chr9:619172 Cla06g01688 Cla-Chr6:30476051 9.10E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61644 PF03195 LOB 1.00E-35 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00064 - - csv:105436286 435.647