Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00066 ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCACAAACCCAACCACCACCTCCTCCTAAGAAGAAGCGCAACCTCCCCGGAAATCCCGAGTTTATGAATTATAACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACGTTGATGGCGACAAATAGATTCGTATGCGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGCGTACACCATGATCCATCAAGAGCACTTGGAGACCTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTTCTCTCTTCTTACAACAACAATAATAATTCACAAGAATTCCTCAACAATAACAATAATAATTTTGCTCTCAAACGAGATTTCAACAATAATAACAGCAGCAGCAACAACAACAATTTGAGAGCGGAGATTCCGCCGTGGCTACAGCCATCGGATCTCCGAGCGGAGATCCTGATGGGAAGTGGGGAGGATGAGAATCCTCATAATAATCATAATCATGAAACCCTAAACCCTAACCCTAATCCGGGGTGCGGGGCCACAAGTGTTCCTCCTCCGGCGTACCAATCGTGTTCTGTTTCTTCTCCTCATATCTCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGTAATTTTGGGGAAATAGGATTATGGTCACGTGAAGTTGAAATGGGTAGAGGAGGAGGAGGAGGAGGAGGAGGGGCTGTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTTCTGCTTCTGCTTCTGCTTCTGCACCCACCACTTTTCTTCATGATATGATCAATTCCCTCTCTTCTCCTTCTGCTTCTCATCCTTTCTTCCATGATAATTCCTCTTTCAACGACCCCGCCACTTTCGCCGCTATGCATCATCACACCGCCGCTCCCGCACCCGCCATCAACACCACCACCGCTGCCACTTCCGGCGGTCGTAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGTGATATTCTAAGTCTTACTGGATTTGGAAGTTGCATTGTTCCTAATTCCTCCAATCTTCATTCTCAAATCCAGAAGCCATGGCAGGGTTAG 1596 44.17 MMMKGNFLSQQQQQIVVMDENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQPPPPPKKKRNLPGNPEFMNYNPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNSQEFLNNNNNNFALKRDFNNNNSSSNNNNLRAEIPPWLQPSDLRAEILMGSGEDENPHNNHNHETLNPNPNPGCGATSVPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEIGLWSREVEMGRGGGGGGGGAVSCSSSSCTDYGNKAASASASASAPTTFLHDMINSLSSPSASHPFFHDNSSFNDPATFAAMHHHTAAPAPAINTTTAATSGGRSDGLTRDFLGLRPLSHGDILSLTGFGSCIVPNSSNLHSQIQKPWQG 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 631084 634085 - ClCG09G000740.2 Cla09g00066 279486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00066 531 Gene3D Classic Zinc Finger 75 144 - -
Cla09g00066 531 SMART c2h2final6 94 116 IPR013087 -
Cla09g00066 531 SMART c2h2final6 171 191 IPR013087 -
Cla09g00066 531 SMART c2h2final6 136 166 IPR013087 -
Cla09g00066 531 Pfam Zinc finger, C2H2 type 94 116 IPR013087 -
Cla09g00066 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Cla09g00066 531 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 510 - -
Cla09g00066 531 Gene3D Classic Zinc Finger 149 228 - -
Cla09g00066 531 SUPERFAMILY beta-beta-alpha zinc fingers 93 191 IPR036236 -
Cla09g00066 531 MobiDBLite consensus disorder prediction 46 69 - -
Cla09g00066 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 510 - -
Cla09g00066 531 MobiDBLite consensus disorder prediction 50 64 - -
Cla09g00066 531 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00066 Cla-Chr9:631084 Cla10g01937 Cla-Chr10:35207330 3.26E-109 dispersed
Cla07g01308 Cla-Chr7:30249706 Cla09g00066 Cla-Chr9:631084 2.05E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61645 PF00096 zf-C2H2 0.0054 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00066 K25870 - csv:101220200 709.523