Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00071 ATGAAAATCGAGTCGATGAGACGGGGAAGGATAAGGGAGAGGCTCCGGCGAAGCCATCTATATACGTTCGCTTGCCTTCGGGCAGACAGCACGCGGGAGGTTGACAATTCAAATCCGTTAACAGGACCTGGCTTCTCACGAACTGTCTGTTGTAATCAACCTGAAGTCCATGAGAAAAAGCCATTGAAATACTGCTCGAATTACATATCCACGACCAAATATAATGTTCTTTCTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCCGGAGGGTTGCCAATTTGTACTTCCTTTTGGCTGCATTGTTATCGCTCACACCAGTTGCCCCATTTTCTGCCATGAGCATGATTGCTCCTTTGGTATTTGTTGTTGGGCTCAGTATGGCTAAAGAAGCTCTTGAGGACTGGCGTCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGTGAATGTCCACAAAGGGGAAGGTGTTTTTGGTTATAGACCATGGCACAAGATTCGAGTAGGAGATATAGTGAAAGTAGAGAAGGATCAGTTCTTTCCAGCCGATCTGCTTCTCTTGTCATCGTGCTATGAGGACGGTATATGTTATGTGGAAACGATGAATTTGGATGGCGAGACAAATCTCAAAGTAAAGAGATCTTTGGAAGTAACCTTACCTTTGGATGATGATGCAACTTTCAAAGATTTTACTGGAAAAATTTACTGTGAAGATCCAAACCCGAATCTTTACACCTTTGTAGGTAACTTTGAGTATGATCGGCAGATTTATCCTCTTGATCCTAATCAGATTCTCCTCAGAGATTCAAAATTGAGGAATACAGCTTATGCCTATGGGGTGGTGATATTTACTGGACATGATAGCAAAGTCATGCAGAATGCTACAAAATCCCCTTCGAAAAGAAGTAGAATAGAGAGAAAAATGGACAAAATTATTTACATCCTTTTTACTCTCCTTATATTGATCTCATCAATAAGCTCAATAGGTTTTGCTGTGAAAACAAAGTACCAAATGACAGACTGGTGGTATTTACGAACTACTGGTGATGATCACGATCCATTGTACAACCCTCGTAAGCCAACCTTATCAGGACTCATACATCTAATCACTGCTCTTATACTTTATGGATATTTGATACCCATCTCGTTATATGTTTCCATCGAGGTTGTTAAGGTTCTGCAAGCTTCCTTCATTAACCAGGATATTAACATGTATTGTGAGGAGACTGGCAATCCAGCTCGAGCTCGAACTTCAAACTTGAACGAGGAGTTGGGTCAGGTAGACACAATCCTATCCGACAAAACAGGCACTTTGACTTGCAACCAGATGGACTTTCTGAAATGTTCCATTGCTGGCACTGCATATGGTGTTAAATCTAGTGAGGTTGAACTTGCAGCTGCAAGGCAGATGGCATATGACTTTGAGGAGCAGGACGGAGAATATTCTGATGTCCAAGGGCAAAAGAATAGCCAACAGCCTTCGATGCCAAATAGCAGAGCAGGGTCCGAGATCGAACTGGAGACTGTTGTTACTTCAAATGATGGCAAGGATCAGAAGTCTGCCATAAAGTATTTTAGCTTTGAGGACAGCCGCCTAACAGGTGGAAACTGGTTGAATGAGCCCAATCATGATGTTCTTCTATTATTCTTCCGAATTTTGGCAATTTGTCACACTGCAATTCCCGAGCTGAATGAGGAGACTGGTGTTTATACATATGAGGCAGAGTCCCCGGATGAAGGTGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAATTTTGTAAGAGAACACAATCAACCTTGGTTGTCCGTGAAAGATATCCTTCACCTGACCAAGTGGTTGAAAGGGAATACAAAATTTTGAATCTTTTGGATTTCACAAGCAAGAGAAAGAGAATGTCTGTAATTATTAGGGACGAGGAGGGCCAGATTATTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTCGACCGACTATCAAAGAATGGAAGAACATATGAGGAAGCAACCACAAGGCATTTGAATGAATATGGAGAAGCAGGGCTGCGAACTCTGGCACTTGCTTATAGGAGGCTTGAGGAGGCTGAATATAATGCTTGGAACAACGAGTTTCAGAAGGCGAAGACATCCATTGGAGGAGATAGAGACGCAATGCTCGAGCGAGTATCCGACCTCATGGAGCGAGAATTAATCCTGGTTGGTGCTACTGCTGTGGAGGACAAGTTACAGAATGGGGTGCCCCAATGCATAGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCCATCAACATAGGATATGCATGCAGTTTACTACGACAGGGAATGAAGCGGATCTGCATATCAGTAAACTCAGATTCCTTAGCACAGGATGGCAAAGAGGCCATGAAAGAAAATATTATGAATCAAATCACCAATGCCTCACAAATGATCAAGCTGGAAAAAGATCCGCATGCTGCATTTGCTTTAATCATTGATGGGAAGACTCTAACTTATGCTCTCGAGGATGATATGAAGCTTCAATTCCTTGGACTCGCTGTTGATTGTGCATCGGTCATTTGCTGTCGAGTCTCCCCCAGGCAGAAGGCACTGGTAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACCACTTTAGCGATTGGTGATGGTGCAAACGATGTAGGAATGATTCAGGAGGCCGATATTGGTGTCGGTATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATAGCTCAATTTCGGTTTCTTGAAAGGCTTCTGGTAGTCCATGGTCATTGGTGCTACAAGAGGATTGCACAAATGATTTGCTATTTCTTCTATAAGAATATTGCATTCGGATTAACGCTATTCTACTTCGAAGCATACGCTGGATTTTCTGGGCAATCAATTTATGATGATTTCTACATGCTATCATTTAATGTCATACTCACCTCATTGCCTGTAATTTCCCTTGGAGTTTTTGAGCAAGATGTCTCTTCTGAGGTGTGCCTACAGTTCCCTGCGCTTTATCAGCAAGGACCTCGAAACTTGTTCTTTGACTGGCCTCGGATTTTCGGATGGATGGGGAACGCTCTCTACTCATCTCTAGTTACTTTCTTCCTCAATCTCATCATATTTTATGACCAGGCATTCCGCTCAGGCGGCCAAACTGCGGATATGACTGCTGTAGGAACCACCATGTTTACTTGCATCATATGGGCAGTAAATTGCCAGATTGCTCTCACAATGAGCCATTTCACCTGGATCCAACACCTTCTCGTCTGGGGTAGTATCGCCATGTGGTATTTGTTCATCTTACTCTATGGAATGATAATATCCTCTGGGAATGCGTATAAAATCTTTGTTGAAGCACTAGGTCCTGCCCCTGTTTACTGGATAGCCACCATTTTAGTAACAATTACCTGTAATCTCCCATATCTTGCCCACATATCCTTCCAAAGAAGCTTCCATCCAATGGATCATCACATTATCCAAGAAATCAAATACTACAGAAAGGATGTTGAAGATACTCACATGTGGACAAGGGAAAGATCAAAGGCAAGGCAAAAGACCAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATCAGACAATTGAAAGGAAGGCTGCAAAAGAAGCACTCTTCCCTTGGTGTGCCTCCAAATGCTGCTACTGCTATATCATGA 3708 42.77 MKIESMRRGRIRERLRRSHLYTFACLRADSTREVDNSNPLTGPGFSRTVCCNQPEVHEKKPLKYCSNYISTTKYNVLSFLPKALFEQFRRVANLYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKVNVHKGEGVFGYRPWHKIRVGDIVKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDDATFKDFTGKIYCEDPNPNLYTFVGNFEYDRQIYPLDPNQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIERKMDKIIYILFTLLILISSISSIGFAVKTKYQMTDWWYLRTTGDDHDPLYNPRKPTLSGLIHLITALILYGYLIPISLYVSIEVVKVLQASFINQDINMYCEETGNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKSSEVELAAARQMAYDFEEQDGEYSDVQGQKNSQQPSMPNSRAGSEIELETVVTSNDGKDQKSAIKYFSFEDSRLTGGNWLNEPNHDVLLLFFRILAICHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVRERYPSPDQVVEREYKILNLLDFTSKRKRMSVIIRDEEGQIILLCKGADSIIFDRLSKNGRTYEEATTRHLNEYGEAGLRTLALAYRRLEEAEYNAWNNEFQKAKTSIGGDRDAMLERVSDLMERELILVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISVNSDSLAQDGKEAMKENIMNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKLQFLGLAVDCASVICCRVSPRQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNALYSSLVTFFLNLIIFYDQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLLVWGSIAMWYLFILLYGMIISSGNAYKIFVEALGPAPVYWIATILVTITCNLPYLAHISFQRSFHPMDHHIIQEIKYYRKDVEDTHMWTRERSKARQKTKIGFTARVEAKIRQLKGRLQKKHSSLGVPPNAATAIS 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 677972 683860 + ClCG09G000790.1 Cla09g00071 279491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00071 1235 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1227 - -
Cla09g00071 1235 SUPERFAMILY HAD-like 419 933 IPR036412 -
Cla09g00071 1235 Gene3D - 594 708 IPR023299 GO:0000166
Cla09g00071 1235 Gene3D - 124 297 - -
Cla09g00071 1235 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 861 970 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla09g00071 1235 CDD P-type_ATPase_APLT_Dnf-like 66 1048 - -
Cla09g00071 1235 Pfam Cation transport ATPase (P-type) 555 660 - -
Cla09g00071 1235 Gene3D - 428 440 IPR023214 -
Cla09g00071 1235 Pfam Phospholipid-translocating ATPase N-terminal 50 116 IPR032631 -
Cla09g00071 1235 Gene3D - 729 929 IPR023214 -
Cla09g00071 1235 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 6 1227 - -
Cla09g00071 1235 Gene3D - 441 465 IPR023299 GO:0000166
Cla09g00071 1235 SUPERFAMILY Calcium ATPase, transmembrane domain M 59 1161 IPR023298 -
Cla09g00071 1235 SFLD C1.7: P-type atpase like 415 940 - -
Cla09g00071 1235 SUPERFAMILY Calcium ATPase, transduction domain A 155 294 IPR008250 -
Cla09g00071 1235 MobiDBLite consensus disorder prediction 483 501 - -
Cla09g00071 1235 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Cla09g00071 1235 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 64 1173 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cla09g00071 1235 Pfam Phospholipid-translocating P-type ATPase C-terminal 917 1165 IPR032630 -
Cla09g00071 1235 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Cla09g00071 1235 PRINTS P-type cation-transporting ATPase superfamily signature 889 908 - -
Cla09g00071 1235 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 532 696 IPR023299 GO:0000166
Cla09g00071 1235 MobiDBLite consensus disorder prediction 478 501 - -
Cla09g00071 1235 SFLD p-type atpase 415 940 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02349 Cla-Chr5:35088234 Cla09g00071 Cla-Chr9:677972 0 dispersed
Cla06g00811 Cla-Chr6:11384214 Cla09g00071 Cla-Chr9:677972 0 dispersed
Cla08g00858 Cla-Chr8:20979650 Cla09g00071 Cla-Chr9:677972 0 dispersed
Cla09g00071 Cla-Chr9:677972 Cla01g00803 Cla-Chr1:9377849 5.07E-14 dispersed
Cla09g00071 Cla-Chr9:677972 Cla04g01120 Cla-Chr4:26405711 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00071 K01530 - csv:101221220 2360.1