Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00078 ATGGATGGAGGTGGCTTAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCATCATCAAAGCCCTCACCGCAGTTTTATCATTGCAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGGTACATGCCTGTTTCTCTGTTTGCCTCTTTTTGTCTTATGAGCTACAAATTTACTATTTTAGAAATCCCTTCTTACCTATGTATATTTGTTATTTGGCGCTTACAGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGCTTAGGCATTTCCCCCCGCATCTACATATAGTAAAAGAACGGAGCTGGGACAATGATATTAGTTTTGATAATGTTTACTGCTCTGCTGGGGACGGTCTCCAATTTTCAAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 984 41.46 MDGGGLVHNRSVEDVFSDFRGRRNGIIKALTAVLSLQMLKSSINNVILVHACFSVCLFLSYELQIYYFRNPFLPMYICYLALTEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTLRHFPPHLHIVKERSWDNDISFDNVYCSAGDGLQFSREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 768976 774571 - ClCG09G000880.2 Cla09g00078 279498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00078 327 ProSiteProfiles Zinc finger PHD-type profile. 271 323 IPR019787 -
Cla09g00078 327 SUPERFAMILY FYVE/PHD zinc finger 263 325 IPR011011 -
Cla09g00078 327 Pfam PHD-finger 274 323 IPR019787 -
Cla09g00078 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 322 IPR013083 -
Cla09g00078 327 CDD PHD_AL_plant 273 323 IPR044104 -
Cla09g00078 327 Pfam Alfin 84 179 IPR021998 GO:0006355|GO:0042393
Cla09g00078 327 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 83 326 - -
Cla09g00078 327 ProSitePatterns Zinc finger PHD-type signature. 274 320 IPR019786 -
Cla09g00078 327 SMART PHD_3 273 321 IPR001965 -
Cla09g00078 327 PANTHER CPG BINDING PROTEIN 83 326 IPR045104 GO:0006355|GO:0042393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00078 - - - csv:101222322 435.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00398 Cla-Chr7:4960689 Cla09g00078 Cla-Chr9:768976 1.19E-88 dispersed
Cla09g00078 Cla-Chr9:768976 Cla10g00714 Cla-Chr10:11292447 1.03E-86 dispersed
Cla11g00146 Cla-Chr11:1751974 Cla09g00078 Cla-Chr9:768976 1.85E-100 wgd
Cla03g01469 Cla-Chr3:30202335 Cla09g00078 Cla-Chr9:768976 1.17E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g122 . . . . . . . . Cmo08g00755 Cmo17g00678 . . . . . Cpe12g00597 Cpe17g00469 . . . . . . . . . . . . . . . . . . Lsi02g02913 Csa07g02370 . Cme01g02823 . . . . . . . . . . . . . Car08g00668 Car17g00661 . . Bhi09g00348 . . . . . . Cla09g00078 Cam09g0081 Cec09g0082 Cco09g0081 Clacu09g0089 . Cre09g0076 . . Chy01g02184 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00714 . 99 350 Alfin-like Transcription Factor Family AT1G14510 84.1 4.1e-114 407.9
Cla08g00996 . 9 212 Alfin-like Transcription Factor Family AT1G14510 66.8 2.0e-81 299.3
Cla10g02093 . 14 251 Alfin-like Transcription Factor Family AT1G14510 59.3 5.5e-79 291.2
Cla07g00398 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 1.4e-77 286.6
Cla09g00078 . 10 324 Alfin-like Transcription Factor Family AT1G14510 51.1 2.3e-77 285.8
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT5G26210 72.8 3.6e-94 341.7
Cla11g00146 CCT 494 867 Alfin-like Transcription Factor Family AT5G26210 51.3 6.2e-94 340.9
Cla08g00996 . 1 212 Alfin-like Transcription Factor Family AT5G26210 67.1 1.3e-88 323.2
Cla09g00078 . 1 326 Alfin-like Transcription Factor Family AT5G26210 50.3 1.4e-82 303.1
Cla07g00398 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.7e-80 296.2
Cla10g02093 . 14 253 Alfin-like Transcription Factor Family AT5G26210 57.1 8.6e-80 293.9
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT3G42790 72.0 1.8e-90 329.3
Cla08g00996 . 1 212 Alfin-like Transcription Factor Family AT3G42790 66.8 1.5e-84 309.7
Cla07g00398 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 3.4e-81 298.5
Cla10g02093 . 22 253 Alfin-like Transcription Factor Family AT3G42790 58.3 9.4e-79 290.4
Cla07g00398 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.0 1.2e-112 402.9
Cla10g02093 . 19 254 Alfin-like Transcription Factor Family AT5G05610 75.5 4.3e-105 377.9
Cla10g00714 . 107 352 Alfin-like Transcription Factor Family AT5G05610 63.2 3.2e-84 308.5
Cla08g00996 . 8 212 Alfin-like Transcription Factor Family AT5G05610 62.2 8.5e-77 283.9
Cla07g00398 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.6 1.3e-95 346.3
Cla10g02093 . 57 254 Alfin-like Transcription Factor Family AT3G11200 76.2 2.5e-86 315.5
Cla09g00078 . 84 326 Alfin-like Transcription Factor Family AT3G11200 56.5 1.5e-70 263.1
Cla10g00714 . 142 352 Alfin-like Transcription Factor Family AT3G11200 64.2 7.4e-70 260.8
Cla08g00996 . 44 212 Alfin-like Transcription Factor Family AT3G11200 61.4 7.4e-62 234.2
Cla10g00714 . 99 259 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Cla08g00996 . 1 159 Alfin-like Transcription Factor Family AT2G02470 74.8 3.0e-64 242.3
Cla10g02093 . 14 169 Alfin-like Transcription Factor Family AT2G02470 65.4 4.8e-54 208.4
Cla11g00146 CCT 494 734 Alfin-like Transcription Factor Family AT2G02470 50.2 1.1e-53 207.2
Cla07g00398 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.1e-53 207.2
Cla09g00078 . 5 200 Alfin-like Transcription Factor Family AT2G02470 58.1 1.5e-52 203.4
Cla08g00996 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 7.9e-70 260.4
Cla10g00714 . 101 270 Alfin-like Transcription Factor Family AT5G20510 71.5 8.2e-67 250.4
Cla11g00146 CCT 494 736 Alfin-like Transcription Factor Family AT5G20510 50.8 1.1e-58 223.4
Cla09g00078 . 1 204 Alfin-like Transcription Factor Family AT5G20510 57.5 9.4e-55 210.3
Cla07g00398 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.1e-52 203.4
Cla10g02093 . 21 171 Alfin-like Transcription Factor Family AT5G20510 61.8 3.7e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61646 PF12165 Alfin 3.70E-49 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00078 Cla_Chr09 FPKM 3.421544 4.996761 4.181856 3.693733 3.303139 1.903411 4.158331 1.021184 1.128036 1.541876