Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00079 ATGAATCTAGGTGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATTCCGGCCGAAATCGATTGGCAAATGCTCGATAAATCTAAATTCTTCTTTCTCGGTGCAGCGTTGTTTTCAGGTGTTTCGGCTTCTCTTTACCCTATGGTGGTGTTGAAAACTCGGCAACAGGTTGCTCATTCGCAACTTCCTTGCATCAGAACTGCATTTTCACTTGTCCGCCATGAAGGTTTTCGAGCTCTCTACCGAGGATTTGGTACTTCTCTAATGGGGACTATCCCGGCTAGAGCTCTATACATGGGAGCTCTTGAGATTACAAAGAGCTATGTCGGAACTGCCACCATTAAAGTGGGATTTCCAGAGACTACTGCAGCTACCATGGCTAACGCAGCTGCTGGATTGAGTGCTGCAATGGCAGCTCAGCTTGTGTGGACTCCTGTTGATGTTGTGAGTCAAAGGCTCATGGTTCAACCTAGCTACAACAATCCCAATTCTTCCTCAACTCATTACATCAATGGAATCGATGCATTTAGAAAGATCCTCAATGCCGACGGCCTCCGAGGCCTCTACCGAGGATTCGGGATATCGATTTTGACCTACGCACCATCGAATGCTGTGTGGTGGGCTTCTTATTATGTAGCCCAGCGGCTAGTTTGGGGTGGAATTGGCTGCTGTTATCATGCAAAGAAGGTTGATGAAGGCAATGAAAATGGAGGTTGTAGTAATGTCTACAAACCGGATTCCAAGACTGTGATTGCGGTTCAGGGGGCGAGCGCAGCAATGGCCGGGAGTATATCGGCTTTGATAACAATGCCACTTGATACAATCAAGACAAGATTGCAAGTTTTGGATGGGGATGAAAATGGGAGAAGAGGGCCAACTATAGGACAGACATTGAGGAATTTGGTAAGGGAAGGAGGGTGGACGGCATGTTACCGAGGCTTGGCACCGCGATGCGCATCAATGTCGATGTCTGCAACGACGATGATCACTACATATGAGTTTTTGAAACGGCTATCAACAAAGAATCAAGAGAGTTTAACAAGCTAA 1047 47.18 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAHSQLPCIRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALEITKSYVGTATIKVGFPETTAATMANAAAGLSAAMAAQLVWTPVDVVSQRLMVQPSYNNPNSSSTHYINGIDAFRKILNADGLRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCCYHAKKVDEGNENGGCSNVYKPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWTACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNQESLTS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 769376 770422 + ClCG09G000870.1 Cla09g00079 279499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00079 348 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Cla09g00079 348 Pfam Mitochondrial carrier protein 125 217 IPR018108 -
Cla09g00079 348 Pfam Mitochondrial carrier protein 253 342 IPR018108 -
Cla09g00079 348 SUPERFAMILY Mitochondrial carrier 23 335 IPR023395 -
Cla09g00079 348 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 345 - -
Cla09g00079 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 338 IPR018108 -
Cla09g00079 348 Gene3D Mitochondrial carrier domain 30 347 IPR023395 -
Cla09g00079 348 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 345 - -
Cla09g00079 348 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Cla09g00079 348 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Cla09g00079 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 216 IPR018108 -
Cla09g00079 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00079 Cla-Chr9:769376 Cla11g00459 Cla-Chr11:5202512 2.67E-84 dispersed
Cla05g01857 Cla-Chr5:30443758 Cla09g00079 Cla-Chr9:769376 4.07E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00079 K15121 - csv:101210602 630.943