Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00094 ATGGGTTTCAAAAAGCTATTCTCTCTAAAATATTTGATACCCAGTTGTTTAAAGCCAAAGAAGCTGCTCACAGGCCCTTCTTCTGCTGGATTTCAAACCTCAAAAAAAATATCTCTTAGAAGAATCTTATCATTGTCTGATATGAGTGTTAGATCATCTTTATCAGTTATTAGTGATCTTTCAAACTCTTGTAATGGTTCAAATCTTCAAATTTTCACCTTTAAAGAACTTGAGGAAGTCACTGAAAACTTCACCAAAAGTAATTATTTGGGTGAAGGAGGATTTGGGCCTGTGTTTAAAGGGTTCATTGAAGACAATTTCAAGCCTGGTTTGAAATCACAGCAAGTGGCTGTGAAGATTTTGGATTTGGATGGCTCTCAAGGCCATAGAGAGTGGCTGGCTGAAGTGTTTTTTCTTGGGCAATTGAGACACCCAAATCTTGTTAATTTGATTGGATATTGTCTTGAAGATGAACAGAGGCTTCTTGTATATGAATATATGGAAGGAGGAAACTTGGAGAATCTGTTGTTTAAATGTTGTTATGTTTCAAATTTGACATGGTTACAAAGGATAAAAATTGCATTAGGATCAGCAAAAGGCCTTGCTTTCTTGCACGAAACCGAAAAACCGATCATTTTTCGAGATTTCAAGGCTTCGAACATCTTACTCGACTCGGATTACAATCCGAAACTTTCAGATTTTGGGTTGGCCATAAATGGTCCCGACGAAGATGATACACATGTAACGACTCGAATCATGGGGACAGAAGGTTATGCGGCCCCAGAATACATCATGACAGGTCATTTGTCAACAATGAGTGATGTGTTCAGCTTTGGGGTGCTTCTATTAGAGTTGCTAACCGGTCGACGAGCGATCGACAAGAATCGACCGAGCCGAGAACAGAACTTGGTGGCTTGGGGAAGACATCTTTTGAAAGATCAACACAAACTTGAAAAGATAATTGATCCAAGGCTTGAGGGGCATTACTCAAATGAAGGGGTTAAAAAATTAGCTACAATAGCTCACCAATGCCTTAGCCACCACCCAAAATGTAGGCCCTCAATGAGCACAGTGGTGAAGGATTTGGAAGTTGTTCTTAACATGAAAGAGTTTCTAACTGAGCCATTTGTGTATATTGTCCCAAGTGAAGAGATGAAAGAGGTGGAGAGACTGGAGAATCGTCATCGGTACGATGACCGAAAAGGTCGAAGCTATAGGCTTCGGGTGTCGTCATCGAGATTGAGATCTGGTGCTGTTCATTCTGATACAGCCTTTATGGAAAATTTATAG 1290 40.0 MGFKKLFSLKYLIPSCLKPKKLLTGPSSAGFQTSKKISLRRILSLSDMSVRSSLSVISDLSNSCNGSNLQIFTFKELEEVTENFTKSNYLGEGGFGPVFKGFIEDNFKPGLKSQQVAVKILDLDGSQGHREWLAEVFFLGQLRHPNLVNLIGYCLEDEQRLLVYEYMEGGNLENLLFKCCYVSNLTWLQRIKIALGSAKGLAFLHETEKPIIFRDFKASNILLDSDYNPKLSDFGLAINGPDEDDTHVTTRIMGTEGYAAPEYIMTGHLSTMSDVFSFGVLLLELLTGRRAIDKNRPSREQNLVAWGRHLLKDQHKLEKIIDPRLEGHYSNEGVKKLATIAHQCLSHHPKCRPSMSTVVKDLEVVLNMKEFLTEPFVYIVPSEEMKEVERLENRHRYDDRKGRSYRLRVSSSRLRSGAVHSDTAFMENL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 914110 916127 + ClCG09G001020.2 Cla09g00094 279514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00094 429 SUPERFAMILY Protein kinase-like (PK-like) 69 386 IPR011009 -
Cla09g00094 429 Gene3D Transferase(Phosphotransferase) domain 1 167 374 - -
Cla09g00094 429 CDD STKc_IRAK 90 363 - -
Cla09g00094 429 PANTHER BNAA02G16030D PROTEIN 39 401 - -
Cla09g00094 429 PANTHER OS01G0588500 PROTEIN-RELATED 39 401 - -
Cla09g00094 429 Gene3D Phosphorylase Kinase; domain 1 55 166 - -
Cla09g00094 429 Pfam Protein tyrosine and serine/threonine kinase 87 362 IPR001245 GO:0004672|GO:0006468
Cla09g00094 429 ProSiteProfiles Protein kinase domain profile. 84 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01635 Cla-Chr5:27790343 Cla09g00094 Cla-Chr9:914110 1.19E-139 dispersed
Cla09g00094 Cla-Chr9:914110 Cla11g01094 Cla-Chr11:22362922 2.92E-131 dispersed
Cla11g00133 Cla-Chr11:1671135 Cla09g00094 Cla-Chr9:914110 7.36E-157 wgd
Cla03g01445 Cla-Chr3:30012403 Cla09g00094 Cla-Chr9:914110 3.13E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80780 PF07714 PK_Tyr_Ser-Thr 5.20E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00094 - - csv:101211828 699.508