Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00127 ATGTGGTGGAGATCGGCCTCTTTCATCCTCGACAAGCAGCAGGCTGAAGGCGCTTCAAAGCCCCCCGAAACCCTTTCTATCTCCCCACCCGCGCAATCTTCTATGGCGGACGCATTTCAAAACCCTAACCCTAAAATCTCAGCCTATTACCAAAGTAGGGCTGCCCACACCGCTGTCGTCACCAGTGATTGGCTCGCCCAGGCGCAGGCCGCTGTCGGATTCCAAACCGACGATCATATACTGTCGGAAACTGATGCCAGGGACTCTGAATCCGGTAAGCCTTTCAGTGTGATCGATGAGTTTAATAACTGGAGGAAACAGCCGGATTTGGCCGAGGCTGTTGCAGCTATTCGGGCTTTGGCGGCTGTAATAAGGTCCAGTCAAGCCACGACTATGATGGAGCTCGAAATTGAGCTGAAGAAGGCTTCGGACTCTCTAAAATCGTGGGATACAACTTCGATATCATTAACAGCTGGCTGTGATTTGTTCATGCGATATGTAACTCGAACATCAGCTTTAGAATATGAGGACTTCAAGTCTGCTAAATCTCGTCTGATTGAACGTGCAGAAAAGTTTGGGGAGATATCTTGTAAGGCACGGAGAATTATTGCAATGCTTAGTCAGGATTTCATTTTTGATGGCTGTACAATTTTGGTCCATGGTTTCTCTAGAGTTGTTATGGAAGTTCTGAGGTTGGCTGCACAGAATAAGAAGCTCTTTAGAGTGTTTTGCACAGAAGGAAGACCGGACAGGACAGGTTTGCGTTTATCCAACGAGCTAGCTAAACTTGATGTCCCTGTAAAGCTCCTAATTGACTCAGCAGTAGCATATACCATGGATGAGGTTGATATGGTTCTTGTTGGGGCTGATGGAGTAGTTGAGAGTGGAGGTATAATCAATATGATGGGCACGTATCAAATTGCATTAGTGGCACATAGCATGAACAAACCGGTGTATGTGGCCGCGGAGAGTTACAAGTTTGCTCGACTGTACCCATTGGATCAAAAAGACATGGCCCCTGCTCTGCGTCCAATAGATTTTGGGGTTCCAATCCCATCCAAGGTTGAAGTTGAAAAATCTGCTCGAGACTATACTCCTCCTCAATACCTTACTCTTCTCTTTACAGATTTGGGTGTTCTCTCTCCATCTGTGGTGAGTGACGAACTCATCCAACTATATTTATAG 1185 46.5 MWWRSASFILDKQQAEGASKPPETLSISPPAQSSMADAFQNPNPKISAYYQSRAAHTAVVTSDWLAQAQAAVGFQTDDHILSETDARDSESGKPFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRSSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFKSAKSRLIERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGFSRVVMEVLRLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVLVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVEKSARDYTPPQYLTLLFTDLGVLSPSVVSDELIQLYL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1270848 1274891 - ClCG09G001360.1 Cla09g00127 279547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00127 394 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 38 394 - -
Cla09g00127 394 Gene3D - 94 195 IPR042528 -
Cla09g00127 394 Coils Coil 132 152 - -
Cla09g00127 394 SUPERFAMILY NagB/RpiA/CoA transferase-like 110 393 IPR037171 -
Cla09g00127 394 Gene3D - 198 394 IPR042529 -
Cla09g00127 394 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 38 394 - -
Cla09g00127 394 Pfam Initiation factor 2 subunit family 108 382 IPR000649 GO:0044237
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00754 Cla-Chr1:8810310 Cla09g00127 Cla-Chr9:1270848 5.51E-22 dispersed
Cla03g01437 Cla-Chr3:29948879 Cla09g00127 Cla-Chr9:1270848 8.04E-12 dispersed
Cla06g01492 Cla-Chr6:28480294 Cla09g00127 Cla-Chr9:1270848 6.63E-14 dispersed
Cla06g01493 Cla-Chr6:28488245 Cla09g00127 Cla-Chr9:1270848 1.42E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00127 K03239 - csv:101211420 744.577